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Projects: FungiNet total, FungiNet A - Aspergillus projects, A2, A8

Institutions: Julius Maximilians University Würzburg, Department of Internal Medicine II, Julius Maximilians University Würzburg, Rudolf Virchow Center, DFG Research Center for Experimental Biomedicine

Xiaojing Shi

Projects: Not specified

Institutions: Not specified

Alisa Puhach

Projects: Not specified

Institutions: Not specified

https://orcid.org/0000-0002-5090-8223

Expertise: Immunology

Tools: Molecular Biology, Cytometry and fluorescent microscopy, Cell and tissue culture

PhD student at Leinbiz-HKI, department of infection immunology. My project name is "GSDME function and regulation in T-cells". The goal of my project is to investigate the function and regulation of a recently found pore-forming protein GSDME in T-cells, how it affects effector functions of T-cells and what is the physiological and clinical relevance of this structure.

Frieda Schmidt

Projects: Not specified

Institutions: Not specified

Ich bin Innenarchitektin mit einer Leidenschaft für die Gestaltung stilvoller und funktionaler Lebensräume. Ich lasse mich von der Schönheit der Natur inspirieren. Außerdem bin ich mehrsprachig und spreche fließend Englisch, Deutsch und Niederländisch. Dies ermöglicht mir eine effektive Kommunikation mit Kunden aus verschiedenen Kulturen und mit unterschiedlichem Hintergrund. Ich bin in der Lage, einen Sinn für Vielfalt in jeden Entwurf einzubringen. So kann ich etwas wirklich Einzigartiges
...

Karlijn Versteeg

Projects: Not specified

Institutions: Not specified

Hoi, mijn naam is Karlijn en ik ben gek op alles wat met interieurdesign van zowel de woonkamer als de slaapkamer te maken heeft. Het is mijn passie! Ik schrijf regelmatig artikelen over dit onderwerp, omdat ik anderen wil helpen om mooie ruimtes te creëren en een goede nachtrust te krijgen.Mijn hoop is dat ik door het delen van mijn kennis een verschil kan maken in het leven van mensen.

https://www.storeboard.com/karlijnversteeg14

Anna Möslinger

Projects: Not specified

Institutions: Not specified

Aakriti Jain

Projects: Not specified

Institutions: Not specified

https://orcid.org/0000-0003-2451-4551

Expertise: Bioinformatician, Researcher, Science Communicator

Tools: Proteomics, Next Generation Sequencing, Machine learning algorithms, Transcriptomics

PhD Scholar at University of Delhi, New Delhi, India. My research interest revolves around Multi-omic investigation of resistance mechanism in fungal pathogens.

Ceren Oktay

Projects: Not specified

Institutions: Not specified

Franziska Schmidt

Projects: A6, FungiNet A - Aspergillus projects, FungiNet total

Institutions: Leibniz-Institute for Natural Product Research and Infection Biology Hans Knöll Institute (HKI)

Nicole Becher

Projects: FungiNet total

Institutions: Friedrich-Schiller-University

Jan-Philipp Praetorius

Projects: B4, FungiNet B - Bioinformatics projects, FungiNet total

Institutions: Leibniz-Institute for Natural Product Research and Infection Biology Hans Knöll Institute (HKI)

https://orcid.org/0000-0002-1828-8351

Roles: PhD Student

Tools: deep learning, Machine Learning, Image analysis

Automated analysis of microscopic image data of host-pathogen interaction

Kerstin Günther

Projects: A7

Institutions: Friedrich-Schiller-University

https://orcid.org/0000-0001-8230-5972

Sarah Vielreicher

Projects: C5, FungiNet total, FungiNet C - Candida projects

Institutions: Leibniz-Institute for Natural Product Research and Infection Biology Hans Knöll Institute (HKI)

Thomas Krüger

Projects: FungiNet total, Z2

Institutions: Leibniz-Institute for Natural Product Research and Infection Biology Hans Knöll Institute (HKI)

Expertise: Host-Pathogen Interaction, Cyanobacterial Toxins, Proteomics, Human-Pathogenic Fungi

Tools: Analytical Chemistry, Liquid Chromatography, Mass spectrometry

Liubov Nikitashina

Projects: Not specified

Institutions: Not specified

Wassili Dimitriew

Projects: B1, FungiNet total, FungiNet B - Bioinformatics projects

Institutions: Friedrich Schiller University Jena, Department of Bioinformatics, School for Biology and Pharmacy, Friedrich-Schiller-University

Jennifer Patitz

Projects: Not specified

Institutions: Not specified

Expertise: Candida albicans, infection models, Host-Pathogen Interaction, Microbiology, Immunology

Tools: Molecular Biology, multicolour flow cytometry, Cell and tissue culture, Cytometry and fluorescent microscopy

Christina Zielinski

Projects: Not specified

Institutions: Not specified

Martin Väth

Projects: C7

Institutions: Julius Maximilians University Würzburg, Institute for Molecular Infection Biology

Michelle Seif

Projects: Not specified

Institutions: Not specified

Michael Hudecek

Projects: A8

Institutions: Julius Maximilians University Würzburg, Rudolf Virchow Center, DFG Research Center for Experimental Biomedicine

Oliver Werz

Projects: A7

Institutions: Friedrich-Schiller-University

Marie Von Lilienfeld-Toal

Projects: A1

Institutions: University Hospital Jena

Annica Pschibul

Projects: Not specified

Institutions: Not specified

Albert Garcia-Lopez

Projects: Not specified

Institutions: Not specified

Christian Luther

Projects: B1, B2, FungiNet B - Bioinformatics projects, FungiNet total

Institutions: Julius Maximilians University Würzburg, Biocenter, Department of Bioinformatics

Roles: PhD Student

Expertise: Proteomics, Lichtheimia corymbifera, Data Management, protein-protein interaction, Integrative Data Analysis, Aspergillus fumigatus, Bioinformatics, Candida albicans, Host-Pathogen Interaction

Tools: Phosphoproteomics, Transcriptomics, R, JavaScript, Network analysis, Proteomics, MySQL, PHP, Python, Java

Kerstin Hünniger

Projects: C3, FungiNet C - Candida projects, FungiNet total

Institutions: Leibniz-Institute for Natural Product Research and Infection Biology Hans Knöll Institute (HKI)

Stefan Schuster

Projects: FungiNet B - Bioinformatics projects, FungiNet total, B1

Institutions: Friedrich Schiller University Jena, Department of Bioinformatics, School for Biology and Pharmacy

Roles: Project Coordinator

Expertise: Systems Biology

Principal investigator in B1.
Full professor in bioinformatics at FSU Jena

Juergen Loeffler

Projects: Not specified

Institutions: Not specified

Florian Mock

Projects: B5, FungiNet B - Bioinformatics projects, FungiNet total

Institutions: Friedrich Schiller University Jena, Bioinformatics/High Throughput Analysis, Faculty of Mathematics und Computer Science

https://orcid.org/0000-0002-1791-4437

Roles: PhD Student

Expertise: Machine Learning, Bioinformatics, Algorithmics

Yidong Yu

Projects: Not specified

Institutions: Not specified

https://orcid.org/0000-0002-2845-1175

Hortense Slevogt

Projects: FungiNet A - Aspergillus projects, FungiNet total, A5

Institutions: Friedrich Schiller University Jena, Center for Innovation Competence (ZIK) Septomics

Wibke Krüger

Projects: C5, FungiNet C - Candida projects, FungiNet total

Institutions: Leibniz-Institute for Natural Product Research and Infection Biology Hans Knöll Institute (HKI)

Marion Adelfinger

Projects: A4 (E)

Institutions: Julius Maximilians University Würzburg, Department of Internal Medicine II

Sascha Schäuble

Projects: A1, A2, A3, A4 (E), A5, A6, B1, B2, B4, B5, C2, C1, C3, C4 (E), C5, C6 (E), FungiNet A - Aspergillus projects, FungiNet B - Bioinformatics projects, FungiNet C - Candida projects, FungiNet total, INF, Z1, Z2, B3 (E), A7, A8, C7

Institutions: Leibniz-Institute for Natural Product Research and Infection Biology Hans Knöll Institute (HKI)

https://orcid.org/0000-0003-3862-6546

Expertise: Systems Biology, Bioinformatics, Metabolic networks

Tools: Matlab, Copasi, R, Python

Muhammad Daud

Projects: Not specified

Institutions: Not specified

Expertise: innate immunity, Candida albicans, fungal pathogens, Immune evasion

Tools: Microbiology, multicolour flow cytometry, Molecular Biology

I am a Phd student at the Institute for virology and Immunobiology, University of Wuerzburg.

Susann Hartung

Projects: Not specified

Institutions: Not specified

Expertise: Aspergillus fumigatus, Cell biology, Microbiology

Tools: aspergillosis-on-chip model, multicolour flow cytometry, Immunological techniques

Thorsten Heinekamp

Projects: FungiNet A - Aspergillus projects, FungiNet total, A1

Institutions: Leibniz-Institute for Natural Product Research and Infection Biology Hans Knöll Institute (HKI)

https://orcid.org/0000-0001-9503-9634

Roles: Postdoc

Expertise: Molecular Biology, Host-Pathogen Interaction, Aspergillus fumigatus, Immune evasion, fungal pathogens, infection models

Tools: Molecular Biology, Mouse models

Marc Thilo Figge

Projects: FungiNet total, FungiNet B - Bioinformatics projects, B4

Institutions: Leibniz-Institute for Natural Product Research and Infection Biology Hans Knöll Institute (HKI), Friedrich-Schiller-University

https://orcid.org/0000-0002-4044-9166

Roles: Project Coordinator

Expertise: Image-based Systems Biology, Lichtheimia corymbifera, Candida albicans, Aspergillus fumigatus

Tools: Image analysis, Mathematical Modelling, Computational and theoretical biology

Paul Rudolph

Projects: B4, FungiNet total

Institutions: Leibniz-Institute for Natural Product Research and Infection Biology Hans Knöll Institute (HKI)

Roles: PhD Student

Expertise: High Performance Computing

Tools: Mathematical Modelling, Finite Element Methode, Numerical Integration

Spatiotemporal Modeling and Simulation of Fungal Infection Processes

Sandra Timme

Projects: B4, FungiNet A - Aspergillus projects, FungiNet B - Bioinformatics projects, FungiNet C - Candida projects, FungiNet total

Institutions: Leibniz-Institute for Natural Product Research and Infection Biology Hans Knöll Institute (HKI)

Paul Jordan

Projects: Not specified

Institutions: Not specified

Olaf Kniemeyer

Projects: FungiNet total, Z2

Institutions: Leibniz-Institute for Natural Product Research and Infection Biology Hans Knöll Institute (HKI)

https://orcid.org/0000-0002-9493-6402

Roles: Project Coordinator

Expertise: Aspergillus fumigatus, Hypoxia, Stress response, Proteomics

Tools: Proteomics, LC-MS/MS, 2D-gel electrophoresis

Head of the subgroup Stress and Immunoproteomics of the Department of Molecular and Applied Microbiology Department at the HKI

Jan Ewald

Projects: B2, FungiNet total, B1

Institutions: Friedrich Schiller University Jena, Department of Bioinformatics, School for Biology and Pharmacy, Julius Maximilians University Würzburg, Biocenter, Department of Bioinformatics

https://orcid.org/0000-0002-9415-2317

Roles: PhD Student, Postdoc

Expertise: Metabolic networks, Systems Biology, Mathematical Modelling

Tools: LaTeX, Python, R, Matlab, Systems biological modelling

Bastian Seelbinder

Projects: B5, INF

Institutions: Leibniz-Institute for Natural Product Research and Infection Biology Hans Knöll Institute (HKI)

https://orcid.org/0000-0002-7458-5289

Expertise: Bioinformatics, Host-Pathogen Interaction, Machine Learning, Integrative Data Analysis, Algorithmics

Bernhard Hube

Projects: FungiNet total, FungiNet C - Candida projects, C1

Institutions: Leibniz-Institute for Natural Product Research and Infection Biology Hans Knöll Institute (HKI), Friedrich Schiller University Jena, Chair MIcrobial Pathogenicity

Roles: Project Coordinator

Mark Gresnigt

Projects: C1

Institutions: Leibniz-Institute for Natural Product Research and Infection Biology Hans Knöll Institute (HKI)

https://orcid.org/0000-0002-9514-4634

Roles: Project Coordinator

Expertise: Immunology, Host-Pathogen Interaction, Immune evasion

Thomas Wolf

Projects: FungiNet total, INF, A1, A2, A3, A4 (E), A5, A6, B1, B2, B3 (E), B4, B5, C1, C2, C3, C4 (E), C5, C6 (E), FungiNet A - Aspergillus projects, FungiNet B - Bioinformatics projects, FungiNet C - Candida projects, Z1, Z2

Institutions: Leibniz-Institute for Natural Product Research and Infection Biology Hans Knöll Institute (HKI)

Roles: Postdoc

Expertise: Bioinformatics, Integrative Data Analysis, Gene Clusters, Data Management, Transcriptional Regulation, Gene Regulatory Network Inference, Secondary Metabolites

Tools: LaTeX, R, CASSIS, MEME, Python, SMIPS, FIMO, Perl, antiSMASH

Peter Großmann

Projects: FungiNet total, INF, A1, A2, A3, A4 (E), A5, A6, B1, B3 (E), B4, B5, C1, C2, C3, C4 (E), C5, C6 (E), Z1, Z2, FungiNet A - Aspergillus projects, FungiNet B - Bioinformatics projects, FungiNet C - Candida projects, B2

Institutions: Leibniz-Institute for Natural Product Research and Infection Biology Hans Knöll Institute (HKI)

https://orcid.org/0000-0001-6106-724X

Expertise: Machine Learning, DNA supercoiling, Metabolic networks, Integrative Data Analysis, Transcriptional Regulation, Bioinformatics

Tools: Systems biological modelling, LaTeX, Matlab, R

Amelia Barber

Projects: INF

Institutions: Leibniz-Institute for Natural Product Research and Infection Biology Hans Knöll Institute (HKI)

https://orcid.org/0000-0002-3399-1037

Jakob Sprague

Projects: C1, FungiNet total

Institutions: Leibniz-Institute for Natural Product Research and Infection Biology Hans Knöll Institute (HKI)

https://orcid.org/0000-0003-0756-803X

Roles: PhD Student

Expertise: fungal pathogens, infection models, Candida albicans, Host-Pathogen Interaction

Tools: Laser-scanning-fluorescence microscopy, Cell biology, Cell and tissue culture

Sybille Dühring

Projects: B1, FungiNet B - Bioinformatics projects, FungiNet total

Institutions: Friedrich Schiller University Jena, Department of Bioinformatics, School for Biology and Pharmacy

Expertise: Mathematical Modelling, Host-Pathogen Interaction, Bioinformatics, Candida albicans, Systems Biology, Biomathematics

Linda Heilig

Projects: A2

Institutions: Julius Maximilians University Würzburg, Department of Internal Medicine II

Franziska Hoffmann

Projects: Z2

Institutions: University Hospital Jena

https://orcid.org/0000-0002-6872-924X

Roles: Postdoc

Expertise: MALDI-MS Imaging, Proteomics

Tools: Cell and tissue culture, Cell biology, Image analysis

I am responisble for the spatial proteomics part in Z2. We provide a proteomic platform to study spatial changes of the proteome during host-fungal pathogen interaction using MALDI-MS Imaging and Lasermicrodissection. As type of biological sample we can work with cryo and formalin fixed tissue, as well as cell cultures and lysed sample solutions.
Please get into contact with me if you are interested in MALDI-MS Imaging for your research project.

Joachim Morschhäuser

Projects: FungiNet total, C2, FungiNet C - Candida projects

Institutions: Julius Maximilians University Würzburg, Institute for Molecular Infection Biology

https://orcid.org/0000-0003-4227-8687

Roles: Project Coordinator

Expertise: Candida albicans, Molecular Biology, Transcriptional Regulation

Tools: Genetic analysis, Molecular Biology

Project leader C2

Annika Tittelbach-Helmrich

Projects: FungiNet A - Aspergillus projects, FungiNet B - Bioinformatics projects, FungiNet C - Candida projects, FungiNet total, Z1

Institutions: Friedrich-Schiller-University, Friedrich Schiller University Jena, Jena School for Microbial Communication, Friedrich Schiller University Jena, Institute of Microbiology, Dept. of Microbiology and Molecular Biology, Leibniz-Institute for Natural Product Research and Infection Biology Hans Knöll Institute (HKI)

Management SFB FungiNet

Oliver Kurzai

Projects: C3, FungiNet total, FungiNet C - Candida projects

Institutions: Julius Maximilians University Würzburg, Institute for Hygiene and Microbiology

https://orcid.org/0000-0002-7277-2646

Juan Pablo Prada Salcedo

Projects: Not specified

Institutions: Not specified

Tools: Several programming languages., Optimization techniques, Machine learning algorithms

DFG Reviewer

Projects: Not specified

Institutions: Not specified

Carl-Magnus Svensson

Projects: B4, FungiNet C - Candida projects, FungiNet A - Aspergillus projects

Institutions: Leibniz-Institute for Natural Product Research and Infection Biology Hans Knöll Institute (HKI)

Roles: Postdoc

Lydia Kasper

Projects: FungiNet C - Candida projects, FungiNet total, C1

Institutions: Leibniz-Institute for Natural Product Research and Infection Biology Hans Knöll Institute (HKI)

Expertise: Molecular Biology, Immune evasion, Candida albicans, pathogenesis, infection models, Host-Pathogen Interaction, fungal pathogens, innate immunity

Tools: Genetic analysis, Cell and tissue culture, Immunological techniques, Cytometry and fluorescent microscopy, Molecular Biology

Ulrich Terpitz

Projects: A3

Institutions: Julius Maximilians University Würzburg, Biocenter, Department of Biotechnology and Biophysics

Bernardo Ramirez-Zavala

Projects: C2, FungiNet C - Candida projects, FungiNet total

Institutions: Julius Maximilians University Würzburg, Institute for Molecular Infection Biology

Roles: Postdoc

Expertise: Molecular Biology, Candida albicans, Protein Kinases

Tools: Molecular Biology, Biochemistry and protein analysis

Marlene Strobel

Projects: A3, FungiNet A - Aspergillus projects, FungiNet total

Institutions: Julius Maximilians University Würzburg, Department of Internal Medicine II

Esther Weiß

Projects: A2, FungiNet total

Institutions: Julius Maximilians University Würzburg, Department of Internal Medicine II

Doktorandin

Rolle von CD56 in der Interaktion von Natürlichen Killerzellen mit Aspergillus fumigatus

Interaktionsanalysen von humanen Dendritischen Zellen und natürlichen Killerzellen bei der Konfrontation mit Aspergillus fumigatus

Christine Skerka

Projects: FungiNet C - Candida projects, FungiNet total, C4 (E)

Institutions: Leibniz-Institute for Natural Product Research and Infection Biology Hans Knöll Institute (HKI)

Expertise: Immunology, Host-Pathogen Interaction, innate immunity, Biochemistry, Complement

Tools: Immunological techniques, Biochemistry and protein analysis

Kerstin Voigt

Projects: FungiNet total, A6

Institutions: Leibniz-Institute for Natural Product Research and Infection Biology Hans Knöll Institute (HKI), Friedrich Schiller University Jena, Institute of Microbiology, Dept. of Microbiology and Molecular Biology

https://orcid.org/0000-0002-1345-9991

Michael Bauer

Projects: FungiNet C - Candida projects, FungiNet total, C5

Institutions: University Hospital Jena, Clinic for Anesthesiology and Intensive Care Medicine

Prasad Dasari

Projects: C6 (E), FungiNet C - Candida projects, FungiNet total

Institutions: Leibniz-Institute for Natural Product Research and Infection Biology Hans Knöll Institute (HKI)

Hanno Schoeler

Projects: FungiNet A - Aspergillus projects, FungiNet total, A1

Institutions: Friedrich Schiller University Jena, Institute of Microbiology, Dept. of Microbiology and Molecular Biology, Leibniz-Institute for Natural Product Research and Infection Biology Hans Knöll Institute (HKI)

Philipp Reuter-Weissenberger

Projects: C1, FungiNet C - Candida projects, FungiNet total

Institutions: Julius Maximilians University Würzburg, Institute for Molecular Infection Biology

James Nzyoka

Projects: Not specified

Institutions: Not specified

Matthias Drobny

Projects: A2, FungiNet A - Aspergillus projects, FungiNet total

Institutions: Julius Maximilians University Würzburg, Department of Internal Medicine II

Roles: PhD Student

Melissa Wich

Projects: FungiNet total, C4 (E), FungiNet C - Candida projects

Institutions: Friedrich Schiller University Jena, Center For Molecular Biomedicine (CMB)

Roles: PhD Student

Tools: Cytometry and fluorescent microscopy, Cell biology, ELISA

Berit Jungnickel

Projects: FungiNet C - Candida projects, C4 (E), FungiNet total

Institutions: Friedrich Schiller University Jena, Center For Molecular Biomedicine (CMB)

Ann-Kathrin Zimmermann

Projects: A1, FungiNet A - Aspergillus projects, FungiNet total

Institutions: Leibniz-Institute for Natural Product Research and Infection Biology Hans Knöll Institute (HKI)

Iordana Shopova

Projects: A1, FungiNet A - Aspergillus projects, FungiNet total

Institutions: Leibniz-Institute for Natural Product Research and Infection Biology Hans Knöll Institute (HKI)

Luke Donald Halder

Projects: C4 (E), FungiNet total, FungiNet C - Candida projects

Institutions: Leibniz-Institute for Natural Product Research and Infection Biology Hans Knöll Institute (HKI)

Flora Rivieccio

Projects: A1, FungiNet A - Aspergillus projects, FungiNet total

Institutions: Leibniz-Institute for Natural Product Research and Infection Biology Hans Knöll Institute (HKI)

Sally Böde

Projects: FungiNet C - Candida projects, C4 (E), FungiNet total

Institutions: Friedrich Schiller University Jena, Center For Molecular Biomedicine (CMB)

Stefanie Dietrich

Projects: B4, FungiNet total, FungiNet B - Bioinformatics projects

Institutions: Leibniz-Institute for Natural Product Research and Infection Biology Hans Knöll Institute (HKI)

Roles: PhD Student

Expertise: Image analysis

Tools: Python, openCV

Svitlana Babych

Projects: C4 (E), FungiNet C - Candida projects, FungiNet total

Institutions: Leibniz-Institute for Natural Product Research and Infection Biology Hans Knöll Institute (HKI)

Mohammad Mirhakkak

Projects: B5, FungiNet B - Bioinformatics projects, FungiNet total

Institutions: Leibniz-Institute for Natural Product Research and Infection Biology Hans Knöll Institute (HKI)

Axel Brakhage

Projects: FungiNet A - Aspergillus projects, FungiNet B - Bioinformatics projects, FungiNet C - Candida projects, FungiNet total, A1, Z1

Institutions: Friedrich Schiller University Jena, Institute of Microbiology, Dept. of Microbiology and Molecular Biology, Friedrich Schiller University Jena, Jena School for Microbial Communication, Leibniz-Institute for Natural Product Research and Infection Biology Hans Knöll Institute (HKI)

Wolfgang Schmidt-Heck

Projects: FungiNet A - Aspergillus projects, FungiNet B - Bioinformatics projects, FungiNet C - Candida projects, FungiNet total, INF

Institutions: Leibniz-Institute for Natural Product Research and Infection Biology Hans Knöll Institute (HKI)

Maja Rey

Projects: INF, FungiNet total, A1, A2, FungiNet A - Aspergillus projects, A3, A4 (E), A5, A6, FungiNet C - Candida projects, C1, C2, C3, C4 (E), C5, C6 (E), FungiNet B - Bioinformatics projects, B3 (E)

Institutions: HITS Heidelberger Institut für Theoretische Studien gGmbH

Expertise: Biochemistry, Phytopathology, Molecular Biology, Data Curation, Microbiology, Data Management

Tools: SABIO-RK, Seek

Within the de.NBI project my functions in the de.NBI-SysBio node comprise content curation, requirements elicitation, and community engagement for the users of biochemical reaction kinetics database SABIO-RK as well as of the data management platform SEEK.

Reinhard Guthke

Projects: FungiNet total, FungiNet B - Bioinformatics projects, FungiNet A - Aspergillus projects, B3 (E), FungiNet C - Candida projects, C5

Institutions: Leibniz-Institute for Natural Product Research and Infection Biology Hans Knöll Institute (HKI)

Expertise: Integrative Data Analysis, Mathematical Modelling, Gene Regulatory Network Inference

Tools: Matlab, R, ODE

Bioprocess data analysis (data mining)
Transcriptomics and proteomics data analysis and modelling
Gene Regulatory Network inference (Reverse engineering)
Decision making support systems in diagnostics, therapy and biotechnology

Manja Marz

Projects: FungiNet B - Bioinformatics projects, FungiNet total, B5

Institutions: Friedrich Schiller University Jena, Bioinformatics/High Throughput Analysis, Faculty of Mathematics und Computer Science

Expertise: ncRNAs

Wolfgang Müller

Projects: INF

Institutions: HITS Heidelberger Institut für Theoretische Studien gGmbH

Dirk Wötzel

Projects: INF

Institutions: BioControl Jena GmbH

Slavena Vylkova

Projects: FungiNet C - Candida projects, FungiNet total, C2

Institutions: Friedrich Schiller University Jena, Center for Innovation Competence (ZIK) Septomics

Roles: Project Coordinator

Expertise: Candida albicans, Transcriptional Regulation, metabolism, pathogenesis

Tools: Microscopy, Biochemistry and protein analysis, Molecular Biology, Cell biology

Ferdinand Von Eggeling

Projects: Z2, FungiNet total

Institutions: University Hospital Jena, Friedrich-Schiller-University

https://orcid.org/0000-0002-8062-6999

Volker Schwartze

Projects: A6

Institutions: Friedrich Schiller University Jena, Institute of Microbiology, Dept. of Microbiology and Molecular Biology

Jörg Linde

Projects: FungiNet A - Aspergillus projects, FungiNet B - Bioinformatics projects, FungiNet C - Candida projects, FungiNet total, INF

Institutions: Leibniz-Institute for Natural Product Research and Infection Biology Hans Knöll Institute (HKI)

Expertise: Host-Pathogen Interaction, Bioinformatics, Gene Regulatory Network Inference, Systems Biology, Integrative Data Analysis

Tools: Transcriptomics, Systems biological modelling, Proteomics, Genetic analysis, Genomics

I study the analysis of high-throughput transcriptom and genome data.

For transcritom data (RNA-Seq, microarrays), I perform preprocessing and statistics to identify differentially expressed genes, as well as their functional analysis. My main focus is the analysis of transcriptom data
from human fungal pathogens in infection related conditions (f.e. nutrient limitation) as well as during the interaction with the host (dual RNA-seq).
Experimental data is used to set up mathematical models for
...

Marta Ferreira Gomes

Projects: FungiNet C - Candida projects, C4 (E), FungiNet total

Institutions: Friedrich Schiller University Jena, Center For Molecular Biomedicine (CMB)

Nicole Engert-Ellenberger

Projects: FungiNet C - Candida projects, FungiNet total, C5

Institutions: Leibniz-Institute for Natural Product Research and Infection Biology Hans Knöll Institute (HKI)

Roles: PhD Student

Lothar Marischen

Projects: A2, FungiNet A - Aspergillus projects, FungiNet total

Institutions: Julius Maximilians University Würzburg, Department of Internal Medicine II

Austin Mottola

Projects: C2, FungiNet total, FungiNet C - Candida projects

Institutions: Julius Maximilians University Würzburg, Institute for Molecular Infection Biology

Roles: PhD Student

Christian Pérez

Projects: C1

Institutions: Julius Maximilians University Würzburg, Institute for Molecular Infection Biology

Daniela Langenhorst

Projects: C6 (E), FungiNet total, FungiNet C - Candida projects

Institutions: Julius Maximilians University Würzburg, Institute for Virology and Immunobiology

Esther Klaile

Projects: A5, FungiNet A - Aspergillus projects, FungiNet total

Institutions: Friedrich Schiller University Jena, Center for Innovation Competence (ZIK) Septomics

https://orcid.org/0000-0001-7389-6862

Expertise: cell surface receptors, protein biochemistry, CEACAM family receptors, protein-protein interaction, Cell biology, signaling mechanisms

Tools: 2D and 3D cell culture, Biochemistry and protein analysis, migration and invasion assays, Cytometry and fluorescent microscopy, Immunological techniques

Natarajaswamy Kalleda

Projects: Not specified

Institutions: Not specified

Jasmin Lother

Projects: A4 (E)

Institutions: Julius Maximilians University Würzburg, Department of Internal Medicine II

Zeinab Mokhtari

Projects: A3, FungiNet A - Aspergillus projects, FungiNet total

Institutions: Julius Maximilians University Würzburg, Department of Internal Medicine II

https://orcid.org/0000-0002-1954-3641

Gianni Panagiotou

Projects: B5, FungiNet B - Bioinformatics projects, FungiNet total, INF

Institutions: Leibniz-Institute for Natural Product Research and Infection Biology Hans Knöll Institute (HKI)

Sarah Irmscher

Projects: C6 (E), FungiNet C - Candida projects, FungiNet total

Institutions: Leibniz-Institute for Natural Product Research and Infection Biology Hans Knöll Institute (HKI)

Michael Weber

Projects: INF, FungiNet total

Institutions: Leibniz-Institute for Natural Product Research and Infection Biology Hans Knöll Institute (HKI)

Vito Valiante

Projects: Not specified

Institutions: Not specified

Stefan Lorkowski

Projects: Not specified

Institutions: Not specified

Emeraldo Jo

Projects: Not specified

Institutions: Not specified

Kaswara Kraibooj

Projects: B4

Institutions: Leibniz-Institute for Natural Product Research and Infection Biology Hans Knöll Institute (HKI)

Ekaterina Shelest

Projects: B3 (E)

Institutions: Leibniz-Institute for Natural Product Research and Infection Biology Hans Knöll Institute (HKI)

Konstantin Riege

Projects: B3 (E)

Institutions: Friedrich Schiller University Jena, Bioinformatics/High Throughput Analysis, Faculty of Mathematics und Computer Science

Christoph Kaleta

Projects: Not specified

Institutions: Not specified

Expertise: Systems Biology, Metabolic networks, Integrative Data Analysis, Regulatory networks

Matthias Brock

Projects: Not specified

Institutions: Not specified

Expertise: Biochemistry, Bioluminescent reporter strains, in vivio Imaging, Host-Pathogen Interaction

Tools: Biochemistry and protein analysis, Bioluminescence Imaging, Mouse models

The following bullet points characterise my scientific interests and research:
- Metabolic physiology of fungi during host infection
- Biochemical characterisation of metabolic pathways (enzyme purification and characterisation)
- Development of infection models
- Generation of fungal reporter strains
- In vivo imaging of the infection process
- Secondary metabolites from Aspergillus terreus (gene regulation, product formation, biological activity)

Philipp Brandt

Projects: C2, FungiNet total, FungiNet C - Candida projects

Institutions: Friedrich-Schiller-University

Expertise: Candida albicans

Patricia Sieber

Projects: FungiNet B - Bioinformatics projects, FungiNet total, B1

Institutions: Friedrich Schiller University Jena, Department of Bioinformatics, School for Biology and Pharmacy, Leibniz-Institute for Natural Product Research and Infection Biology Hans Knöll Institute (HKI)

Sylvie Schulze

Projects: B3 (E)

Institutions: Leibniz-Institute for Natural Product Research and Infection Biology Hans Knöll Institute (HKI)

Expertise: Gene Regulatory Network Inference

Andreas Dix

Projects: B3 (E)

Institutions: Leibniz-Institute for Natural Product Research and Infection Biology Hans Knöll Institute (HKI)

Theresia Conrad

Projects: B3 (E)

Institutions: Leibniz-Institute for Natural Product Research and Infection Biology Hans Knöll Institute (HKI)

Daniela Albrecht-Eckardt

Projects: INF, Z2

Institutions: BioControl Jena GmbH

Expertise: Statistics, Data Management, Integrative Data Analysis, Bioinformatics, Systems Biology

Falk Hillmann

Projects: FungiNet total

Juliane Meir

Projects: C1

Institutions: Julius Maximilians University Würzburg, Institute for Molecular Infection Biology

Naile Koleci

Projects: C6 (E)

Institutions: Leibniz-Institute for Natural Product Research and Infection Biology Hans Knöll Institute (HKI)

Oguzhan Angay

Projects: A3

Institutions: Julius Maximilians University Würzburg, Rudolf Virchow Center, DFG Research Center for Experimental Biomedicine

Berkan Arslan

Projects: A3

Institutions: Julius Maximilians University Würzburg, Department of Internal Medicine II

Teresa Lehnert

Projects: B4

Institutions: Leibniz-Institute for Natural Product Research and Infection Biology Hans Knöll Institute (HKI)

Nora Trinks

Projects: A3

Institutions: Julius Maximilians University Würzburg, Biocenter, Department of Biotechnology and Biophysics

Joanna Niemiec

Projects: C5

Institutions: Leibniz-Institute for Natural Product Research and Infection Biology Hans Knöll Institute (HKI)

Stefanie Allert

Projects: C1, FungiNet C - Candida projects, FungiNet total

Institutions: Leibniz-Institute for Natural Product Research and Infection Biology Hans Knöll Institute (HKI)

Jürgen Löffler

Projects: FungiNet A - Aspergillus projects, FungiNet total, A2

Institutions: Julius Maximilians University Würzburg, Department of Internal Medicine II

Peter Zipfel

Projects: FungiNet total, FungiNet C - Candida projects, C6 (E)

Institutions: Leibniz-Institute for Natural Product Research and Infection Biology Hans Knöll Institute (HKI), Friedrich-Schiller-University

Niklas Beyersdorf

Projects: FungiNet C - Candida projects, FungiNet total, C6 (E)

Institutions: Julius Maximilians University Würzburg, Institute for Virology and Immunobiology

Ilse Jacobsen

Projects: FungiNet C - Candida projects, FungiNet total, FungiNet A - Aspergillus projects, C5

Institutions: Leibniz-Institute for Natural Product Research and Infection Biology Hans Knöll Institute (HKI)

Roles: Project Coordinator

Expertise: pathogenesis, fungal pathogens, infection models, Candida albicans

Tools: Immunological techniques, Cytometry and fluorescent microscopy, Mouse models, Molecular Biology, Bioluminescence Imaging, Cell and tissue culture

Marcus Dittrich

Projects: FungiNet B - Bioinformatics projects, FungiNet total, B2

Institutions: Julius Maximilians University Würzburg, Biocenter, Department of Bioinformatics

Thomas Dandekar

Projects: FungiNet B - Bioinformatics projects, FungiNet total, B1, B2

Institutions: Julius Maximilians University Würzburg, Biocenter, Department of Bioinformatics

Expertise: Bioinformatics, Gene Regulatory Network Inference, Metabolic networks, Biochemistry, Integrative Data Analysis, Systems Biology, Host-Pathogen Interaction, Mathematical Modelling

Tools: Systems biological modelling, bioinformatics protein and RNA structure analysis

Name
Prof. Dr. Thomas Dandekar
Position Professor and Chairman
Affiliation
Dept. of bioinformatics,
Biocenter
University of Würzburg
Am Hubland
97074 Würzburg
Phone 0931-318-4551
dandekar@biozentrum.uni-wuerzburg.de
Born 23.07.1960

Career 1979-1986 Studies in medicine at the Ludwig Maximilians University of Munich
1982-1986 MD, Max Planck Inst. of Psychiatry, Dept. Neuropharmacology, Martinsried
1987-1988 Post-Doc, Institute Pasteur, Paris
1988- now Scientist at the European Molecular Biology
...

Max Topp

Projects: FungiNet A - Aspergillus projects, FungiNet total, A4 (E)

Institutions: Julius Maximilians University Würzburg, Department of Internal Medicine II

Katrin Heinze

Projects: FungiNet A - Aspergillus projects, FungiNet total, A3

Institutions: Julius Maximilians University Würzburg, Rudolf Virchow Center, DFG Research Center for Experimental Biomedicine

Andreas Beilhack