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SEEK ID: https://funginet.hki-jena.de/projects/16
Public web page: http://www.funginet.de/project-area-b.html
Organisms: Aspergillus fumigatus, Candida albicans
INF PALs: No PALs for this Project
Project created: 1st Oct 2012
Related items
- People (31)
- Institutions (18)
- Investigations (0+2)
- Studies (0+7)
- Assays (0+9)
- Data files (3+3)
- Models (1+8)
- SOPs (1+1)
- Publications (32)
- Presentations (0+36)
- Events (1+14)
Projects: FungiNet A - Aspergillus projects, FungiNet B - Bioinformatics projects, FungiNet C - Candida projects, FungiNet total, A1, Z1
Institutions: Friedrich Schiller University Jena, Institute of Microbiology, Dept. of Microbiology and Molecular Biology, Friedrich Schiller University Jena, Jena School for Microbial Communication, Leibniz-Institute for Natural Product Research and Infection Biology Hans Knöll Institute (HKI)
Name
Prof. Dr. Thomas Dandekar
Position Professor and Chairman
Affiliation
Dept. of bioinformatics,
Biocenter
University of Würzburg
Am Hubland
97074 Würzburg
Phone 0931-318-4551
dandekar@biozentrum.uni-wuerzburg.de
Born 23.07.1960
Career 1979-1986 Studies in medicine at the Ludwig Maximilians University of Munich
1982-1986 MD, Max Planck Inst. of Psychiatry, Dept. Neuropharmacology, Martinsried
1987-1988 Post-Doc, Institute Pasteur, Paris
1988- now Scientist at the European Molecular Biology
...
This is the result of OrthoMCL analysis.
Creator: Shishir K Gupta
Contributor: Shishir K Gupta
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Creator: Reinhard Guthke
Contributor: Reinhard Guthke
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Creator: Reinhard Guthke
Contributor: Reinhard Guthke
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Primary hepatocytes were exposed to a stimulus by exchanging culture medium, thereby simulating changes in the blood composition. The expression of genes at different time points was recorded. Differentially expressed genes were clustered using fuzzy c-means algorithm into five groups. The arcs of the possible network were identified using the NetGenerator algorithm under the restriction of biological knowledge. The analysis was restricted to the main metabolic pathways of hepatocytes. The reverse
...
Creators: Thomas Wolf, Wolfgang Schmidt-Heck, Reinhard Guthke
Contributor: Thomas Wolf
Model type: Ordinary differential equations (ODE)
Model format: SBML
Environment: JWS Online
Organism: Not specified
Investigations: No Investigations
Studies: No Studies
Modelling analyses: No Modelling analyses
RNA-Seq is a method to measure the transcript/gene expression by adaption of High-throughput sequencing technologies. In contrast to microarrays where the measurement is based on a hybridization process, RNA-Seq sequences cDNA in order to get information about a sample's RNA content.
Creators: Reinhard Guthke, Jörg Linde, Steffen Priebe
Contributors: Reinhard Guthke, Sascha Schäuble
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Abstract (Expand)
Authors: K. Czakai, I. Leonhardt, Andreas Dix, M. Bonin, Jörg Linde, Hermann Einsele, Oliver Kurzai, Jürgen Löffler
Date Published: 28th Jun 2016
Journal: Sci Rep
PubMed ID: 27346433
Citation:
Abstract (Expand)
Authors: Andreas Dix, S. Vlaic, Reinhard Guthke, Jörg Linde
Date Published: 27th Apr 2016
Journal: Clin Microbiol Infect
PubMed ID: 27113568
Citation:
Abstract (Expand)
Authors: Reinhard Guthke, S. Gerber, Theresia Conrad, S. Vlaic, S. Durmus, T. Cakir, F. E. Sevilgen, Ekaterina Shelest, Jörg Linde
Date Published: 22nd Apr 2016
Journal: Front Microbiol
PubMed ID: 27148247
Citation:
Abstract (Expand)
Authors: Sylvie Schulze, J. Schleicher, Reinhard Guthke, Jörg Linde
Date Published: 31st Mar 2016
Journal: Front Microbiol
PubMed ID: 27065992
Citation:
Abstract (Expand)
Authors: Andreas Dix, K. Czakai, J. Springer, M. Fliesser, M. Bonin, Reinhard Guthke, A. L. Schmitt, Hermann Einsele, Jörg Linde, Jürgen Löffler
Date Published: 21st Mar 2016
Journal: Front Microbiol
PubMed ID: 27047454
Citation:
9. September 2014
A5 und B1
Slevogt / Schuster
Start Date: 9th Sep 2014
End Date: Not specified
Event Website: Not specified
Country: Germany
City: Jena