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SEEK ID: https://funginet.hki-jena.de/people/124
Location:
Germany
Expertise: Not specified
Tools: Not specified
ORCID: Not specified

B4 (Leibniz-Institute for Natural Product Research and Infection Biology Hans Knöll Institute (HKI))
FungiNet C - Candida projects (Leibniz-Institute for Natural Product Research and Infection Biology Hans Knöll Institute (HKI)) ; FungiNet A - Aspergillus projects (Leibniz-Institute for Natural Product Research and Infection Biology Hans Knöll Institute (HKI))
Related items
- Projects (3)
- Institutions (1)
- Investigations (0+1)
- Data files (0+1)
- Models (3)
- Publications (16)
- Presentations (0+3)
Image data analysis and agent-based modelling of the spatio-temporal interaction between immune cells and human-pathogenic fungi
README
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This package contains code that generates and analyses tracks in 2D given three
distinct condition; non-persistent, persistent and directed by the
Ornstein-Uhlenbeck process. Full details on the analysis can be found in the
article "Svensson et al., Untangling cell tracks: quantifying cell migration by
time lapse image data analysis, Cytometry Pt A, 2017". The paper can be found
on
...
Creator: Carl-Magnus Svensson
Contributor: Carl-Magnus Svensson
Model type: Ordinary differential equations (ODE)
Model format: Not specified
Environment: Not specified
Organism: Not specified
Investigations: No Investigations
Studies: No Studies
Modelling analyses: No Modelling analyses
This is the image analysis algorithm used in Cseresnyes, Kraibooj and Figge, Hessian-based quantitative image analysis of host-pathogen confrontation assays
Cytometry A. 2018 Mar;93(3):346-356. doi: 10.1002/cyto.a.23201. Code is being maintained at https://github.com/applied-systems-biology/ACAQ3.
Read.me
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This package contains code that implements the Hessian-based macrophage segmentation algorithm.
In addition, the
...
Creator: Carl-Magnus Svensson
Contributor: Carl-Magnus Svensson
Model type: Not specified
Model format: Not specified
Environment: Not specified
Organism: Aspergillus fumigatus
Investigations: No Investigations
Studies: No Studies
Modelling analyses: No Modelling analyses
Code for Bayesian analysis of pseudo-time resolved somatic hyper-mutations. Hirth et al., "Regulation of the germinal center reaction and somatic hypermutation dynamics by homologus recombination", Jounal of Immunology. 9, 2019, ji1900483; DOI: https://doi.org/10.4049/jimmunol.1900483
README
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This package contains code and data that calulates and tests differences in
realative mutation frequancy between Control and
...
Creator: Carl-Magnus Svensson
Contributor: Carl-Magnus Svensson
Model type: Not specified
Model format: Not specified
Environment: Not specified
Organism: Not specified
Investigations: No Investigations
Studies: No Studies
Modelling analyses: No Modelling analyses
Abstract (Expand)
Authors: F. Schmidt, A. Thywissen, M. Goldmann, C. Cunha, Z. Cseresnyes, H. Schmidt, M. Rafiq, S. Galiani, M. H. Graler, G. Chamilos, J. F. Lacerda, A. Jr Campos, C. Eggeling, Marc Thilo Figge, Thorsten Heinekamp, S. G. Filler, A. Carvalho, Axel Brakhage
Date Published: 18th Aug 2020
Journal: Cell Rep
PubMed ID: 32814035
Citation: Cell Rep. 2020 Aug 18;32(7):108017. doi: 10.1016/j.celrep.2020.108017.
Abstract (Expand)
Authors: Z. Cseresnyes, M. I. A. Hassan, H. M. Dahse, Kerstin Voigt, Marc Thilo Figge
Date Published: 26th Jun 2020
Journal: Front Microbiol
PubMed ID: 32582113
Citation: Front Microbiol. 2020 Jun 5;11:1193. doi: 10.3389/fmicb.2020.01193. eCollection 2020.
Abstract (Expand)
Authors: B. Bottcher, B. Hoffmann, E. Garbe, T. Weise, Z. Cseresnyes, Philipp Brandt, Stefanie Dietrich, D. Driesch, Marc Thilo Figge, Slavena Vylkova
Date Published: 20th May 2020
Journal: Front Microbiol
PubMed ID: 32425915
Citation: Front Microbiol. 2020 Apr 30;11:794. doi: 10.3389/fmicb.2020.00794. eCollection 2020.
Abstract (Expand)
Authors: Iordana Shopova, I. Belyaev, Prasad Dasari, S. Jahreis, M. C. Stroe, Z. Cseresnyes, Ann-Kathrin Zimmermann, A. Medyukhina, Carl-Magnus Svensson, Thomas Krüger, V. Szeifert, S. Nietzsche, Theresia Conrad, M. G. Blango, Olaf Kniemeyer, M. von Lilienfeld-Toal, Peter Zipfel, E. Ligeti, Marc Thilo Figge, Axel Brakhage
Date Published: 14th Apr 2020
Journal: mBio
PubMed ID: 32291301
Citation: mBio. 2020 Apr 14;11(2). pii: mBio.00596-20. doi: 10.1128/mBio.00596-20.
Abstract (Expand)
Authors: Prasad Dasari, Naile Koleci, Iordana Shopova, D. Wartenberg, Niklas Beyersdorf, Stefanie Dietrich, A. Sahagun-Ruiz, Marc Thilo Figge, Christine Skerka, Axel Brakhage, Peter Zipfel
Date Published: 12th Dec 2019
Journal: Front Immunol
PubMed ID: 31824478
Citation: Front Immunol. 2019 Nov 22;10:2573. doi: 10.3389/fimmu.2019.02573. eCollection 2019.