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Integrated database for experimental data
Within the Collaborative Research Center / Transregio 124 “Pathogenic fungi and their human host: Networks of Interaction – FungiNet”, the INF project is responsible to analyse and share OMICS data. Databases help to foster the collaboration within FungiNet as an important point of the Collaborative Research Center. Therefore, we set-up two databases:
a) SEEK is a web-based platform to find, share and exchange unstructured data and knowledge, such as project descriptions, presentations, posters, meeting reports, SOPs, experiment descriptions and data (in future with link to FuniNet DB), etc.
https://funginet.hki-jena.de
This database is available for you since 2012. For details how to register and use SEEK: see our E-mails.
b) The datawarehouse FungiNetDB. It is used for structured data, e.g. high-throughput expression data. This database offers the possibility for advanced search, visualization and analysis. Today, we give you informations how to use FungiNetDB.
FungiNetDB currently stores gene expression data and experimental descriptions generated within FungiNet but also downloaded from public resources. The datawarehouse allows for standard visualisation of gene expression data.
Here is the link to FungiNetDB
https://funginetdb.hki-jena.de/
Aims of the FungiNet INF project are:
- Support sharing and exchange of data, models and expertise (e. g., SOPs)
- Pre-processing and standardised analysis of experimental data
- Direct and support further experiments and modeling via information retrieval
- Web-based platform and service to foster collaboration and standardisation within the FungiNet consortium
SEEK ID: https://funginet.hki-jena.de/projects/18
Public web page: http://www.funginet.de/project-inf.html
Organisms: Aspergillus fumigatus, Candida albicans
INF PALs: No PALs for this Project
Project created: 21st Feb 2013
Related items
- People (13)
- Institutions (3)
- Investigations (1+4)
- Studies (3+10)
- Assays (6+23)
- Data files (10+4)
- Models (0+3)
- Publications (44)
- Presentations (0+25)
- Events (0+12)
- Documents (0+1)
- Samples (0+41)
Institutions: BioControl Jena GmbH

Projects: FungiNet total, INF, A1, A2, A3, A4 (E), A5, A6, B1, B3 (E), B4, B5, C1, C2, C3, C4 (E), C5, C6 (E), Z1, Z2, FungiNet A - Aspergillus projects, FungiNet B - Bioinformatics projects, FungiNet C - Candida projects, B2
Institutions: Leibniz-Institute for Natural Product Research and Infection Biology Hans Knöll Institute (HKI)

I study the analysis of high-throughput transcriptom and genome data.
For transcritom data (RNA-Seq, microarrays), I perform preprocessing and statistics to identify differentially expressed genes, as well as their functional analysis. My main focus is the analysis of transcriptom data
from human fungal pathogens in infection related conditions (f.e. nutrient limitation) as well as during the interaction with the host (dual RNA-seq).
Experimental data is used to set up mathematical models for
...
Projects: INF
Institutions: HITS Heidelberger Institut für Theoretische Studien gGmbH
M Vödisch, D Albrecht, F Leßing, A D Schmidt, R Winkler, R Guthke, A A Brakhage, OKniemeyer. Two-dimensional proteome reference maps for the human-pathogenic filamentous fungus Aspergillus fumigatus. Proteomics. 2009 Mar;9(5):1407-1415. View
J Teutschbein, D Albrecht, M Pötsch, R Guthke, V Aimanianda, C Clavaud, JP Latge, A A Brakhage, O Kniemeyer. Proteome Profiling and Functional Classification of Intracellular Proteins from Conidia of the Human-Pathogenic Mold Aspergillus fumigatus. J Proteome
...
Snapshots: No snapshots
Proteome Map of the mycelium of Aspergillus fumigatus
Person responsible: Daniela Albrecht-Eckardt
Snapshots: No snapshots
Investigation: Proteome Map of Aspergillus fumigatus
Assays: Mastergel mycelium
Proteome Map of the mitochondrion of Aspergillus fumigatus
Person responsible: Daniela Albrecht-Eckardt
Snapshots: No snapshots
Investigation: Proteome Map of Aspergillus fumigatus
Assays: Mastergel mitochondrion
Proteome Map of the conidia of Aspergillus fumigatus
Person responsible: Daniela Albrecht-Eckardt
Snapshots: No snapshots
Contributor: Daniela Albrecht-Eckardt
Assay type: Experimental Assay Type
Technology type: Technology Type
Snapshots: No snapshots
Investigation: Proteome Map of Aspergillus fumigatus
Study: Mycelium
Organisms: No organisms
SOPs: No SOPs
Data files: Mastergel mycelium, mzData Mycelia
Contributor: Daniela Albrecht-Eckardt
Assay type: Experimental Assay Type
Technology type: Technology Type
Snapshots: No snapshots
Investigation: Proteome Map of Aspergillus fumigatus
Study: Mitochondrion
Organisms: No organisms
SOPs: No SOPs
Data files: Mastergel mitochondrion, mzData Mitochondria
Contributor: Daniela Albrecht-Eckardt
Assay type: Experimental Assay Type
Technology type: 2D Gel Electrophoresis
Snapshots: No snapshots
Investigation: Proteome Map of Aspergillus fumigatus
Study: Conidia
Organisms: No organisms
SOPs: No SOPs
Data files: Mastergel conidia 7-11NL
Contributor: Daniela Albrecht-Eckardt
Assay type: Experimental Assay Type
Technology type: 2D Gel Electrophoresis
Snapshots: No snapshots
Investigation: Proteome Map of Aspergillus fumigatus
Study: Conidia
Organisms: No organisms
SOPs: No SOPs
Data files: Mastergel conidia 6-9
Contributor: Daniela Albrecht-Eckardt
Assay type: Experimental Assay Type
Technology type: 2D Gel Electrophoresis
Snapshots: No snapshots
Investigation: Proteome Map of Aspergillus fumigatus
Study: Conidia
Organisms: No organisms
SOPs: No SOPs
Data files: Mastergel conidia 3-7 NL
Creators: Daniela Albrecht-Eckardt, Olaf Kniemeyer
Contributor: Daniela Albrecht-Eckardt
Investigations: Proteome Map of Aspergillus fumigatus
Studies: Conidia
Assays: Mastergel conidia 3-7 NL
Creators: Daniela Albrecht-Eckardt, Olaf Kniemeyer
Contributor: Daniela Albrecht-Eckardt
Creators: Daniela Albrecht-Eckardt, Olaf Kniemeyer
Contributor: Daniela Albrecht-Eckardt
Creators: Daniela Albrecht-Eckardt, Olaf Kniemeyer
Contributor: Daniela Albrecht-Eckardt
Investigations: Proteome Map of Aspergillus fumigatus
Studies: Mitochondrion
Assays: Mastergel mitochondrion
Creators: Daniela Albrecht-Eckardt, Olaf Kniemeyer
Contributor: Daniela Albrecht-Eckardt
Investigations: Proteome Map of Aspergillus fumigatus
Studies: Mitochondrion
Assays: Mastergel mitochondrion
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Authors: M. Tscherner, F. Zwolanek, S. Jenull, F. J. Sedlazeck, A. Petryshyn, I. E. Frohner, J. Mavrianos, N. Chauhan, A. von Haeseler, K. Kuchler
Date Published: No date defined
Journal: PLoS Pathog
PubMed ID: 26473952
Citation: PLoS Pathog. 2015 Oct 16;11(10):e1005218. doi: 10.1371/journal.ppat.1005218. eCollection 2015 Oct.
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Authors: P. Patumcharoenpol, M. Nakphaichit, Gianni Panagiotou, A. Senavonge, N. Suratannon, W. Vongsangnak
Date Published: 6th Jan 2021
Journal: PLoS Comput Biol
PubMed ID: 33406089
Citation: PLoS Comput Biol. 2021 Jan 6;17(1):e1008487. doi: 10.1371/journal.pcbi.1008487. eCollection 2021 Jan.
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Authors: Mohammad Mirhakkak, Sascha Schäuble, Tilman Klassert, S. Brunke, Philipp Brandt, D. Loos, R. V. Uribe, F. Senne de Oliveira Lino, Y. Ni, Slavena Vylkova, Hortense Slevogt, Bernhard Hube, Esther Weiß, M. O. A. Sommer, Gianni Panagiotou
Date Published: 15th Dec 2020
Journal: ISME J
PubMed ID: 33323978
Citation: ISME J. 2020 Dec 15. pii: 10.1038/s41396-020-00848-z. doi: 10.1038/s41396-020-00848-z.
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Authors: W. Khaliq, Peter Großmann, S. Neugebauer, A. Kleyman, R. Domizi, S. Calcinaro, D. Brealey, M. Graler, M. Kiehntopf, Sascha Schäuble, M. Singer, Gianni Panagiotou, Michael Bauer
Date Published: 11th Dec 2020
Journal: Comput Struct Biotechnol J
PubMed ID: 33304464
Citation: Comput Struct Biotechnol J. 2020 Nov 21;18:3678-3691. doi: 10.1016/j.csbj.2020.11.009. eCollection 2020.
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Authors: A. E. Barber, J. Riedel, T. Sae-Ong, K. Kang, W. Brabetz, Gianni Panagiotou, H. B. Deising, Oliver Kurzai
Date Published: 24th Nov 2020
Journal: mBio
PubMed ID: 33234685
Citation: mBio. 2020 Nov 24;11(6). pii: mBio.02213-20. doi: 10.1128/mBio.02213-20.