Integrated database for experimental data
Within the Collaborative Research Center / Transregio 124 “Pathogenic fungi and their human host: Networks of Interaction – FungiNet”, the INF project is responsible to analyse and share OMICS data. Databases help to foster the collaboration within FungiNet as an important point of the Collaborative Research Center. Therefore, we set-up two databases:
a) SEEK is a web-based platform to find, share and exchange unstructured data and knowledge, such as project descriptions, presentations, posters, meeting reports, SOPs, experiment descriptions and data (in future with link to FuniNet DB), etc. https://funginet.hki-jena.de This database is available for you since 2012. For details how to register and use SEEK: see our E-mails.
b) The datawarehouse FungiNetDB. It is used for structured data, e.g. high-throughput expression data. This database offers the possibility for advanced search, visualization and analysis. Today, we give you informations how to use FungiNetDB. FungiNetDB currently stores gene expression data and experimental descriptions generated within FungiNet but also downloaded from public resources. The datawarehouse allows for standard visualisation of gene expression data.
Here is the link to FungiNetDB https://funginetdb.hki-jena.de/
Aims of the FungiNet INF project are:
- Support sharing and exchange of data, models and expertise (e. g., SOPs)
- Pre-processing and standardised analysis of experimental data
- Direct and support further experiments and modeling via information retrieval
- Web-based platform and service to foster collaboration and standardisation within the FungiNet consortium
SEEK ID: https://funginet.hki-jena.de/projects/18
Public web page: http://www.funginet.de/project-inf.html
Organisms: Aspergillus fumigatus, Candida albicans
INF PALs: No PALs for this Project
Project created: 21st Feb 2013
Related items
- People (14)
- Programmes (1)
- Institutions (3)
- Investigations (1+4)
- Studies (3+10)
- Assays (6+23)
- Data files (10+4)
- Models (0+3)
- Publications (53)
- Presentations (0+27)
- Events (0+19)
- Documents (0+1)
- Sample types (0+2)
- Samples (0+41)
Institutions: BioControl Jena GmbH

Projects: FungiNet total, INF, A1, A2, A3, A4 (E), A5, A6, B1, B3 (E), B4, B5, C1, C2, C3, C4 (E), C5, C6 (E), Z1, Z2, FungiNet A - Aspergillus projects, FungiNet B - Bioinformatics projects, FungiNet C - Candida projects, B2
Institutions: Leibniz-Institute for Natural Product Research and Infection Biology Hans Knöll Institute (HKI)

I study the analysis of high-throughput transcriptom and genome data.
For transcritom data (RNA-Seq, microarrays), I perform preprocessing and statistics to identify differentially expressed genes, as well as their functional analysis. My main focus is the analysis of transcriptom data from human fungal pathogens in infection related conditions (f.e. nutrient limitation) as well as during the interaction with the host (dual RNA-seq). Experimental data is used to set up mathematical models for ...
The yeast Candida albicans and the filamentous fungus Aspergillus fumigatus are by far the most important causes of life-threatening invasive mycoses in Europe. Despite the increasing incidence of these infections, the current diagnosis is still difficult and often too late, and options for therapies are limited. Moreover, A. fumigatus and C. albicans have developed multiple sophisticated, specific and unique pathogenicity mechanisms. Many of these mechanisms are not well understood. Research on ...
Projects: FungiNet total, FungiNet A - Aspergillus projects, FungiNet B - Bioinformatics projects, FungiNet C - Candida projects, INF, A1, A2, A3, A4 (E), A5, B1, B2, B3 (E), B4, C1, C2, C3, C4 (E), C5, C6 (E), Z2, Z1, B5, A6, A7, A8, C7
Web page: http://www.funginet.de/home.html
M Vödisch, D Albrecht, F Leßing, A D Schmidt, R Winkler, R Guthke, A A Brakhage, OKniemeyer. Two-dimensional proteome reference maps for the human-pathogenic filamentous fungus Aspergillus fumigatus. Proteomics. 2009 Mar;9(5):1407-1415. View
J Teutschbein, D Albrecht, M Pötsch, R Guthke, V Aimanianda, C Clavaud, JP Latge, A A Brakhage, O Kniemeyer. Proteome Profiling and Functional Classification of Intracellular Proteins from Conidia of the Human-Pathogenic Mold Aspergillus fumigatus. J Proteome ...
Submitter: Daniela Albrecht-Eckardt
Studies: Conidia, Mitochondrion, Mycelium
Assays: Mastergel conidia 3-11 NL, Mastergel conidia 3-7 NL, Mastergel conidia 6-9, Mastergel conidia 7-11 NL, Mastergel mitochondrion, Mastergel mycelium
Snapshots: No snapshots
Proteome Map of the mycelium of Aspergillus fumigatus
Submitter: Daniela Albrecht-Eckardt
Investigation: Proteome Map of Aspergillus fumigatus
Assays: Mastergel mycelium
Snapshots: No snapshots
Proteome Map of the mitochondrion of Aspergillus fumigatus
Submitter: Daniela Albrecht-Eckardt
Investigation: Proteome Map of Aspergillus fumigatus
Assays: Mastergel mitochondrion
Snapshots: No snapshots
Proteome Map of the conidia of Aspergillus fumigatus
Submitter: Daniela Albrecht-Eckardt
Investigation: Proteome Map of Aspergillus fumigatus
Assays: Mastergel conidia 3-11 NL, Mastergel conidia 3-7 NL, Mastergel conidia 6-9, Mastergel conidia 7-11 NL
Snapshots: No snapshots
Submitter: Daniela Albrecht-Eckardt
Assay type: Experimental Assay Type
Technology type: 2D Gel Electrophoresis
Investigation: Proteome Map of Aspergillus fumigatus
Study: Conidia
Submitter: Daniela Albrecht-Eckardt
Assay type: Experimental Assay Type
Technology type: 2D Gel Electrophoresis
Investigation: Proteome Map of Aspergillus fumigatus
Study: Conidia
Submitter: Daniela Albrecht-Eckardt
Assay type: Experimental Assay Type
Technology type: 2D Gel Electrophoresis
Investigation: Proteome Map of Aspergillus fumigatus
Study: Conidia
Submitter: Daniela Albrecht-Eckardt
Assay type: Experimental Assay Type
Technology type: 2D Gel Electrophoresis
Investigation: Proteome Map of Aspergillus fumigatus
Study: Conidia
Submitter: Daniela Albrecht-Eckardt
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Proteome Map of Aspergillus fumigatus
Study: Mitochondrion
Organisms: No organisms
SOPs: No SOPs
Data files: Mastergel mitochondrion, mzData Mitochondria
Snapshots: No snapshots
Creators: Daniela Albrecht-Eckardt, Olaf Kniemeyer
Submitter: Daniela Albrecht-Eckardt
Investigations: Proteome Map of Aspergillus fumigatus
Studies: Conidia
Assays: Mastergel conidia 3-7 NL
Creators: Daniela Albrecht-Eckardt, Olaf Kniemeyer
Submitter: Daniela Albrecht-Eckardt
Creators: Daniela Albrecht-Eckardt, Olaf Kniemeyer
Submitter: Daniela Albrecht-Eckardt
Creators: Daniela Albrecht-Eckardt, Olaf Kniemeyer
Submitter: Daniela Albrecht-Eckardt
Investigations: Proteome Map of Aspergillus fumigatus
Studies: Mitochondrion
Assays: Mastergel mitochondrion
Creators: Daniela Albrecht-Eckardt, Olaf Kniemeyer
Submitter: Daniela Albrecht-Eckardt
Investigations: Proteome Map of Aspergillus fumigatus
Studies: Mitochondrion
Assays: Mastergel mitochondrion
Abstract (Expand)
Authors: S. Schruefer, A. Pschibul, S. S. W. Wong, T. Sae-Ong, T. Wolf, S. Schauble, G. Panagiotou, A. A. Brakhage, V. Aimanianda, O. Kniemeyer, F. Ebel
Date Published: 14th Nov 2023
Publication Type: Journal
PubMed ID: 37964194
Citation: BMC Genomics. 2023 Nov 14;24(1):684. doi: 10.1186/s12864-023-09777-5.
Abstract (Expand)
Authors: M. H. Mirhakkak, X. Chen, Y. Ni, T. Heinekamp, T. Sae-Ong, L. L. Xu, O. Kurzai, A. E. Barber, A. A. Brakhage, S. Boutin, S. Schauble, G. Panagiotou
Date Published: 20th Jul 2023
Publication Type: Journal
PubMed ID: 37474497
Citation: Nat Commun. 2023 Jul 20;14(1):4369. doi: 10.1038/s41467-023-39982-5.
Abstract (Expand)
Authors: A. A. Kelani, A. Bruch, F. Rivieccio, C. Visser, T. Kruger, D. Weaver, X. Pan, S. Schauble, G. Panagiotou, O. Kniemeyer, M. J. Bromley, P. Bowyer, A. E. Barber, A. A. Brakhage, M. G. Blango
Date Published: 19th Jun 2023
Publication Type: Journal
PubMed ID: 37019633
Citation: RNA. 2023 Jul;29(7):1033-1050. doi: 10.1261/rna.079350.122. Epub 2023 Apr 5.
Abstract (Expand)
Authors: P. Brandt, M. H. Mirhakkak, L. Wagner, D. Driesch, A. Moslinger, P. Fander, S. Schauble, G. Panagiotou, S. Vylkova
Date Published: 15th Jun 2023
Publication Type: Journal
PubMed ID: 37097196
Citation: Microbiol Spectr. 2023 Jun 15;11(3):e0049823. doi: 10.1128/spectrum.00498-23. Epub 2023 Apr 25.
Abstract (Expand)
Authors: A. Hader, S. Schauble, J. Gehlen, N. Thielemann, B. C. Buerfent, V. Schuller, T. Hess, T. Wolf, J. Schroder, M. Weber, K. Hunniger, J. Loffler, S. Vylkova, G. Panagiotou, J. Schumacher, O. Kurzai
Date Published: 5th Jun 2023
Publication Type: Journal
PubMed ID: 37277347
Citation: Nat Commun. 2023 Jun 5;14(1):3239. doi: 10.1038/s41467-023-38994-5.