Collaborative Research Center / Transregio 124 "Pathogenic fungi and their human host: Networks of Interaction - FungiNet"
The yeast Candida albicans and the filamentous fungus Aspergillus fumigatus are by far the most important causes of life-threatening invasive mycoses in Europe. Despite the increasing incidence of these infections, the current diagnosis is still difficult and often too late, and options for therapies are limited. Moreover, A. fumigatus and C. albicans have developed multiple sophisticated, specific and unique pathogenicity mechanisms. Many of these mechanisms are not well understood. Research on these microorganisms therefore will discover and elucidate novel biological principles, including new regulatory and metabolic pathways.
To obtain a comprehensive insight into these medically important fungi, scientists from Jena and Würzburg have initiated the Collaborative Research Center / Transregio 124 Pathogenic fungi and their human host: Networks of Interaction - FungiNet.
The aims of this CRC/Transregio are
(1) to identify pathogenic determinants specific for each fungus,
(2) to investigate the specific roles of epithelial barriers, the mechanisms of the innate immunity and potential contributions of the adaptive immune system for/to the pathogenesis of fungal infections,
(3) to elucidate the complex mechanisms of fungal infections and identify common principles of fungal pathogenesis and
(4) to use this information for new therapeutic approaches.
For a comprehensive description and understanding of complex invasive fungal infections, we believe it is important to apply a systems biological approach as a third dimension added to the pathobiology of the pathogens and the response of the immune system. Systems biology will contribute to uncover the structure and dynamics of molecular and cellular cause-effect relations within these pathogenic interactions.
FungiNet applies three interlinked approaches to fungal pathogenesis:
A Aspergillus fumigatus: from environmental microorganism to pathogen
B Bioinformatics / Computational systems biology of infection: creation of a “virtual infection model”
C Candida albicans: from commensal to pathogen
Web page: http://www.funginet.de/home.html
Funding details:DFG
Collaborative Research Center / Transregio 124 "Pathogenic fungi and their human host: Networks of Interaction - FungiNet"
Related items
- People (130)
- Projects (27)
- Institutions (23)
- Investigations (16+41)
- Studies (45+39)
- Assays (46+50)
- Data files (67+80)
- Models (11+12)
- SOPs (7+24)
- Publications (203)
- Presentations (12+241)
- Events (5+64)
- Documents (0+4)
- Samples (12+489)
Projects: A4 (E)
Institutions: Julius Maximilians University Würzburg, Department of Internal Medicine II
Institutions: BioControl Jena GmbH
Projects: A3
Institutions: Julius Maximilians University Würzburg, Department of Internal Medicine II
Gene-engineered CAR T-cells and macrophages to treat Aspergillus fumigatus infection
Integrated database for experimental data
Within the Collaborative Research Center / Transregio 124 “Pathogenic fungi and their human host: Networks of Interaction – FungiNet”, the INF project is responsible to analyse and share OMICS data. Databases help to foster the collaboration within FungiNet as an important point of the Collaborative Research Center. Therefore, we set-up two databases:
a) SEEK is a web-based platform to find, share and exchange unstructured data and knowledge, such as ...
Role and targeting of bioactive lipid mediators in Aspergillus fumigatus innate immune cell interactions
Surface proteins of Lichtheimia corymbifera as virulence determinants
P Hortschansky, M Eisendle, Q Al-Abdallah, A D Schmidt, S Bergmann, M Thön, O Kniemeyer, B Abt, B Seeber, E R Werner, M Kato, A A Brakhage and H Haas. Interaction of HapX with the CCAAT-binding complex-a novel mechanism of gene regulation by iron. EMBO J. 2007 Jul 11;26(13):3157-68. Epub 2007 Jun 14
Snapshots: No snapshots
Wartenberg D, Vödisch M, Kniemeyer O, Albrecht-Eckardt D, Scherlach K, Winkler R, Weide M, Brakhage AA. Proteome analysis of the farnesol-induced stress response in Aspergillus nidulans-The role of a putative dehydrin. J Proteomics. 2012 May 23.
Submitter: Daniela Albrecht-Eckardt
Studies: Control, Farnesol Treatment, Internal Standard
Assays: Control gels, Farnesol gels, Standard gels
Snapshots: No snapshots
D Albrecht, R Guthke, A A Brakhage, O Kniemeyer. Integrative analysis of the heat shock response in Aspergillus fumigatus. BMC Genomics. 2010 Jan 15;11:32.
Find corresponding transcriptomic data at ArrayExpress: E-MEXP-332
Submitter: Daniela Albrecht-Eckardt
Studies: pooled standard, t=0, t=120, t=180, t=30, t=60
Assays: pooled standard gels, t0 gels, t120 gels, t180 gels, t30 gels, t60 gels
Snapshots: No snapshots
Dirk Wartenberg, Katrin Lapp, Ilse D. Jacobsen, Hans-Martin Dahse, Olaf Kniemeyer, Thorsten Heinekamp, Axel A. Brakhage Leibniz Institute for Natural Product Research and Infection Biology-Hans-Knoell-Institute (HKI), Jena, Germany. Secretome analysis of Aspergillus fumigatus reveals Asp-hemolysin as a major secreted protein. Int J Med Microbiol. 2011, Nov;301(7):602-11
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Teutschbein J, Simon S, Lother J, Springer J, Hortschansky P, Morton CO, Löffler J, Einsele H, Conneally E, Rogers TR, Guthke R, Brakhage AA, Kniemeyer O. Proteomic profiling of serological responses to Aspergillus fumigatus antigens in patients with invasive aspergillosis. J Proteome Res 2016 Mar 24
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Aspergillus nidulans R21 was grown over night in AMM at 37°C and 200 rpm. The culture was treated with 50 µM farnesol or the same volume of ethanol without farnesol as control. The culture was harvested after 3 hours of further incubation.
Snapshots: No snapshots
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Submitter: Daniela Albrecht-Eckardt
Assay type: Experimental Assay Type
Technology type: 2D Gel Electrophoresis
Investigation: Proteome Map of Aspergillus fumigatus
Study: Conidia
Submitter: Daniela Albrecht-Eckardt
Assay type: Experimental Assay Type
Technology type: 2D Gel Electrophoresis
Investigation: Proteome Map of Aspergillus fumigatus
Study: Conidia
Submitter: Daniela Albrecht-Eckardt
Assay type: Experimental Assay Type
Technology type: 2D Gel Electrophoresis
Investigation: Proteome Map of Aspergillus fumigatus
Study: Conidia
Submitter: Daniela Albrecht-Eckardt
Assay type: Experimental Assay Type
Technology type: 2D Gel Electrophoresis
Investigation: Proteome Map of Aspergillus fumigatus
Study: Conidia
Submitter: Daniela Albrecht-Eckardt
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Proteome Map of Aspergillus fumigatus
Study: Mitochondrion
Organisms: No organisms
SOPs: No SOPs
Data files: Mastergel mitochondrion, mzData Mitochondria
Snapshots: No snapshots
Creator: Daniela Albrecht-Eckardt
Submitter: Daniela Albrecht-Eckardt
Creator: Daniela Albrecht-Eckardt
Submitter: Daniela Albrecht-Eckardt
Creator: Daniela Albrecht-Eckardt
Submitter: Daniela Albrecht-Eckardt
Creator: Daniela Albrecht-Eckardt
Submitter: Daniela Albrecht-Eckardt
Creator: Daniela Albrecht-Eckardt
Submitter: Daniela Albrecht-Eckardt
README
This package contains code that generates and analyses tracks in 2D given three distinct condition; non-persistent, persistent and directed by the Ornstein-Uhlenbeck process. Full details on the analysis can be found in the article "Svensson et al., Untangling cell tracks: quantifying cell migration by time lapse image data analysis, Cytometry Pt A, 2017". The paper can be found on ...
Creator: Carl-Magnus Svensson
Submitter: Carl-Magnus Svensson
Model type: Ordinary differential equations (ODE)
Model format: Not specified
Environment: Not specified
Organism: Not specified
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
This model is a variant of the previously developed SBM of whole-blood infection assay. While in the previous model a spontaneous immune evasion mechanism (A) was implemented in this model immune evasion was caused by PMN molecule secretion (B).
Creators: Teresa Lehnert, Maria T. E. Prauße
Submitter: Sandra Timme
Model type: Not specified
Model format: Not specified
Environment: Not specified
The state-based model (SBM) allow to simulate the interplay between innate immune cells, such as monocytes and PMN, and Candida albicans and to quantify immune reaction rates like phagocytosis and killing rates. It is implemented in C++.
Creator: Teresa Lehnert
Submitter: Sandra Timme
Model type: Not specified
Model format: Not specified
Environment: Not specified
DynaCoSys models the complement system by using a combination of Ordinary and Partial Differential Equations.
Creators: Teresa Lehnert, Alexander Tille
Submitter: Sandra Timme
Model type: Partial differential equations (PDE)
Model format: Not specified
Environment: Not specified
Adaptation of the previously developed virtual infection model of Aspergillus fumigatus in a human alveolus. This model comprises a hybrid agent-based model of a single murine alveolus. The alveolus is represented in a realistic to-scale representation and contains the cell types of alveolar epithelial cells (AEC) of type 1 and 2 as well as the pores of Kohn (PoK). Furthermore, in this model, depending on the infection dose multiple A. fumigatus conidium are inserted into the alveolus and the ...
Creators: Sandra Timme, Marco Blickensdorf
Submitter: Sandra Timme
Model type: Agent based modelling
Model format: Not specified
Environment: Not specified
Organism: Aspergillus fumigatus
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
RNA-Seq is a method to measure the transcript/gene expression by adaption of High-throughput sequencing technologies. In contrast to microarrays where the measurement is based on a hybridization process, RNA-Seq sequences cDNA in order to get information about a sample's RNA content.
Creators: Reinhard Guthke, Jörg Linde, Steffen Priebe
Submitters: Reinhard Guthke, Sascha Schäuble
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Creator: Franziska Hoffmann
Submitter: Franziska Hoffmann
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Creator: Franziska Hoffmann
Submitter: Franziska Hoffmann
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Creators: Franziska Hoffmann, Daniela Pelzel
Submitter: Franziska Hoffmann
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Creators: Franziska Hoffmann, Daniela Pelzel
Submitter: Franziska Hoffmann
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Abstract (Expand)
Authors: S. Schruefer, A. Pschibul, S. S. W. Wong, T. Sae-Ong, T. Wolf, S. Schauble, G. Panagiotou, A. A. Brakhage, V. Aimanianda, O. Kniemeyer, F. Ebel
Date Published: 14th Nov 2023
Publication Type: Journal
PubMed ID: 37964194
Citation: BMC Genomics. 2023 Nov 14;24(1):684. doi: 10.1186/s12864-023-09777-5.
Abstract (Expand)
Authors: M. H. Mirhakkak, X. Chen, Y. Ni, T. Heinekamp, T. Sae-Ong, L. L. Xu, O. Kurzai, A. E. Barber, A. A. Brakhage, S. Boutin, S. Schauble, G. Panagiotou
Date Published: 20th Jul 2023
Publication Type: Journal
PubMed ID: 37474497
Citation: Nat Commun. 2023 Jul 20;14(1):4369. doi: 10.1038/s41467-023-39982-5.
Abstract (Expand)
Authors: A. A. Kelani, A. Bruch, F. Rivieccio, C. Visser, T. Kruger, D. Weaver, X. Pan, S. Schauble, G. Panagiotou, O. Kniemeyer, M. J. Bromley, P. Bowyer, A. E. Barber, A. A. Brakhage, M. G. Blango
Date Published: 19th Jun 2023
Publication Type: Journal
PubMed ID: 37019633
Citation: RNA. 2023 Jul;29(7):1033-1050. doi: 10.1261/rna.079350.122. Epub 2023 Apr 5.
Abstract (Expand)
Authors: P. Brandt, M. H. Mirhakkak, L. Wagner, D. Driesch, A. Moslinger, P. Fander, S. Schauble, G. Panagiotou, S. Vylkova
Date Published: 15th Jun 2023
Publication Type: Journal
PubMed ID: 37097196
Citation: Microbiol Spectr. 2023 Jun 15;11(3):e0049823. doi: 10.1128/spectrum.00498-23. Epub 2023 Apr 25.
Abstract (Expand)
Authors: A. Hader, S. Schauble, J. Gehlen, N. Thielemann, B. C. Buerfent, V. Schuller, T. Hess, T. Wolf, J. Schroder, M. Weber, K. Hunniger, J. Loffler, S. Vylkova, G. Panagiotou, J. Schumacher, O. Kurzai
Date Published: 5th Jun 2023
Publication Type: Journal
PubMed ID: 37277347
Citation: Nat Commun. 2023 Jun 5;14(1):3239. doi: 10.1038/s41467-023-38994-5.
Start Date: 19th Nov 2018
End Date: 20th Nov 2018
Event Website: Not specified
Country: Germany
City: Bad Staffelstein
This year's 12th IMIHM meeting is held for the fifth time as a Joint Meeting together with scientists from the CRC TransRegio 124 (“Pathogenic fungi and their human host: Networks of interaction – FungiNet”). This collaborative Research Centre FungiNet is a network of scientists from Jena and Wuerzburg and is funded by the Deutsche Forschungsgemeinschaft. The Consortium collaborates to better understand complex invasive mycoses by investigating the pathobiology of fungi, the response of the immune ...
Start Date: 26th Jun 2018
End Date: 27th Jun 2018
Event Website: Not specified
Country: Germany
City: Würzburg
This year‘s 11 th IMIHM meeting is held for the fourth time as a Joint Meeting together with scientists from the CRC TransRegio 124 (“Pathogenic fungi and their human host: Networks of interaction – FungiNet”). This Collaborative Research Centre FungiNet is a network of scientists from Jena and Wuerzburg and is funded by the Deutsche Forschungsgemeinschaft. The Consortium collaborates to better understand complex invasive mycoses by investigating the pathobiology of fungi, the response of the ...
Start Date: 7th Sep 2017
End Date: 8th Sep 2017
Event Website: Not specified
Country: Germany
City: Würzburg
Start Date: 9th Feb 2017
End Date: 10th Feb 2017
Event Website: Not specified
Country: Germany
City: Würzburg
- September 2014
A5 und B1
Slevogt / Schuster
Start Date: 9th Sep 2014
End Date: Not specified
Event Website: Not specified
Country: Germany
City: Jena