Cell track generator
Version 1

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README
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This package contains code that generates and analyses tracks in 2D given three
distinct condition; non-persistent, persistent and directed by the
Ornstein-Uhlenbeck process. Full details on the analysis can be found in the
article "Svensson et al., Untangling cell tracks: quantifying cell migration by
time lapse image data analysis, Cytometry Pt A, 2017". The paper can be found
on http://onlinelibrary.wiley.com/journal/10.1002/%28ISSN%291552-4930 or by
contacting the author using the email address
carl-magnus.svensson@leibniz-hki.de or cmgsvensson@gmail.com.

If any part of this code is used for academic purposes please cite the paper
above.

Contents
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generate_tracks.py:
Script for generating tracks, calculating some measures and plotting
both the tracks and the measures.
track_measures.py:
Functions for calculation of the measures used in generate_tracks.py
README:
What you currently have open.
LICENCE:
Licencing details of this software (BSD License 2.0).

Example videos for three conditions are avialable from
carl-magnus.svensson@leibniz-hki.de or cmgsvensson@gmail.com.

SEEK ID: https://funginet.hki-jena.de/models/30?version=1

1 item is associated with this Model:
  • track_review_code.zip (Zip file - 5.78 KB) Download

Organism: Not specified

Model type: Ordinary differential equations (ODE)

Model format: Not specified

Execution or visualisation environment: Not specified

Model image: No image specified

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Views: 130   Downloads: 20

Created: 19th Feb 2021 at 09:06

Last used: 11th May 2021 at 05:39

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