Af_30min-O2-C3
Sample File "FungiNet_template_RNA-seq_V1.9_Ex_ID_005"
whole_organism
Aspergillus fumigatus
other
conidia
Not specified
Not specified
Not specified
not applicable
Not specified
Not specified
30
minute(s)
37
degrees_C
Not specified
hypoxia
none
Not specified
none
NO STORAGE
Not specified
Not specified
RNA EXTRACTION
Af_30min-O2-C3
Not specified
Not specified
Not specified
Not specified
μg/ml
Not specified
μl
RNA extraction kit
total_RNA
Not specified
NO STORAGE
Not specified
Not specified
SEQUENCING
Af_30min-O2-C3
GATC Biotech
Sequencing by synthesis (Illumina)
Not specified
Illumina HiSeq 2000
transcriptomic
single end; poly-A filter
random
single
Not specified
STORAGE
24 July 2015
stored at HKI Backupserver
/sbiarchiv/jlinde/A_fumigatus/Falk_Hillmann_2013_04/NG-6598_C3_lib20933_1519_6_1.fastq.gz
Creators and Submitter
Views: 1588
Created: 5th Sep 2017 at 09:31
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AttributionsNone
Related items
Projects: INF, FungiNet total, A1, A2, FungiNet A - Aspergillus projects, A3, A4 (E), A5, A6, FungiNet C - Candida projects, C1, C2, C3, C4 (E), C5, C6 (E), FungiNet B - Bioinformatics projects, B3 (E)
Institutions: HITS Heidelberger Institut für Theoretische Studien gGmbH
Within the de.NBI project my functions in the de.NBI-SysBio node comprise content curation, requirements elicitation, and community engagement for the users of biochemical reaction kinetics database SABIO-RK as well as of the data management platform SEEK.
The yeast Candida albicans and the filamentous fungus Aspergillus fumigatus are by far the most important causes of life-threatening invasive mycoses in Europe. Despite the increasing incidence of these infections, the current diagnosis is still difficult and often too late, and options for therapies are limited. Moreover, A. fumigatus and C. albicans have developed multiple sophisticated, specific and unique pathogenicity mechanisms. Many of these mechanisms are not well understood. Research on ...
Projects: FungiNet total, FungiNet A - Aspergillus projects, FungiNet B - Bioinformatics projects, FungiNet C - Candida projects, INF, A1, A2, A3, A4 (E), A5, B1, B2, B3 (E), B4, C1, C2, C3, C4 (E), C5, C6 (E), Z2, Z1, B5, A6, A7, A8, C7
Web page: http://www.funginet.de/home.html
Cross talk of Aspergillus fumigatus with neutrophilic granulocytes
Cultivation of A. fumigatus in an O2-controlled fermenter and analysed its minute-scale responses to O2 limitation. Transcriptome sequencing revealed a group of genes underlying a rapid and highly dynamic regulation.
Creators: Jörg Linde, Falk Hillmann, Olaf Kniemeyer
Submitter: Maja Rey
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Source: Specimen (String) *, Source: Material Type (String) , Source: Organism (String) , Source: Strain or Line (String) , Source: Organism Part (String) , Source: OrganismStatus (String) , Source: Number of fungal organisms (Integer) , Source: Unit for number of fungi (String) , Source: Sex (e.g. for mice) (String) , Source: Age (Real number) , Source: Age Time Unit (String) , Source: Sampling Time Point (Real number) , Source: Sampling Time Point Unit (String) , Source: Temperature (Real number) , Source: Temperature Unit (String) , Source: pH (Real number) , Source: Atmosphere (String) , Source: Compound (String) , Source: Media (String) , Source: Nutrients (String) , Source: Storage Protocol (String) , Source: Storage Date (Date) , Source: Storage Location (String) , RNA Extraction: Extraction Protocol (String) , RNA Extraction: Extract Name (String) , RNA Extraction: 260/280 (Real number) , RNA Extraction: 230/280 (Real number) , RNA Extraction: RIN/RNA integrity number (Real number) , RNA Extraction: Concentration (Real number) , RNA Extraction: Concentration Unit (String) , RNA Extraction: Volume (Real number) , RNA Extraction: Volume Unit (String) , RNA Extraction: Extraction Kit (String) , RNA Extraction: Material Type (String) , RNA Extraction: Extraction Date (Date) , RNA Extraction: Storage Protocol (String) , RNA Extraction: Storage Date (Date) , RNA Extraction: Storage Location (String) , Sequencing: Sequencing Protocol (String) , Sequencing: Assay Name (String) , Sequencing: Sequencing Performer (String) , Sequencing: Technology Type (String) , Sequencing: Read Length (Integer) , Sequencing: Sequencing Instrument (String) , Sequencing: Library Source (String) , Sequencing: Library Strategy (Text) , Sequencing: Library Selection (String) , Sequencing: Library Layout (String) , Sequencing: Sequencing Date (Date) , Sequencing: Storage Protocol (String) , Sequencing: Storage Date (Date) , Sequencing: Storage Location (String) , Sequencing: Data File (Text)
