Models

README

This package contains code that generates and analyses tracks in 2D given three distinct condition; non-persistent, persistent and directed by the Ornstein-Uhlenbeck process. Full details on the analysis can be found in the article "Svensson et al., Untangling cell tracks: quantifying cell migration by time lapse image data analysis, Cytometry Pt A, 2017". The paper can be found on ...

This is the image analysis algorithm used in Cseresnyes, Kraibooj and Figge, Hessian-based quantitative image analysis of host-pathogen confrontation assays Cytometry A. 2018 Mar;93(3):346-356. doi: 10.1002/cyto.a.23201. Code is being maintained at https://github.com/applied-systems-biology/ACAQ3.

Read.me

This package contains code that implements the Hessian-based macrophage segmentation algorithm. In addition, the ...

Code for Bayesian analysis of pseudo-time resolved somatic hyper-mutations. Hirth et al., "Regulation of the germinal center reaction and somatic hypermutation dynamics by homologus recombination", Jounal of Immunology. 9, 2019, ji1900483; DOI: https://doi.org/10.4049/jimmunol.1900483

README

This package contains code and data that calulates and tests differences in realative mutation frequancy between Control and ...