Projects: B1, FungiNet B - Bioinformatics projects, FungiNet total
Institutions: Julius Maximilians University Würzburg, Biocenter, Department of Bioinformatics

Disciplines: Modeller, Bioinformatician
Roles: Not specified
Expertise: Host-Pathogen Interaction, Docking, Signaling Networks, Evolutionary Bioinformatics, Molecular Modeling, Immunoinformatics, Bioinformatics, Comparative Genomics, Simulations
Tools: Transcriptomics, Perl, Systems biological modelling, Genomics, R
Projects: B1, B2, FungiNet B - Bioinformatics projects, FungiNet total
Institutions: Julius Maximilians University Würzburg, Biocenter, Department of Bioinformatics
Disciplines: Bioinformatician
Roles: Not specified
Expertise: Aspergillus fumigatus, Candida albicans, Host-Pathogen Interaction, Bioinformatics
Tools: Not specified
Projects: B1, FungiNet B - Bioinformatics projects, FungiNet total
Institutions: Friedrich Schiller University Jena, Department of Bioinformatics, School for Biology and Pharmacy
Disciplines: Modeller
Roles: Not specified
Expertise: Mathematical Modelling, Host-Pathogen Interaction, Bioinformatics, Candida albicans, Systems Biology, Biomathematics
Tools: Not specified
Projects: FungiNet total, INF, A1, A2, A3, A4, A5, A6, B1, B2, B3 (E), B4, B5, C1, C2, C3, C4, C5, C6, FungiNet A - Aspergillus projects, FungiNet B - Bioinformatics projects, FungiNet C - Candida projects, Z1, Z2
Institutions: Leibniz-Institute for Natural Product Research and Infection Biology Hans Knöll Institute (HKI)
Disciplines: Bioinformatician
Roles: Postdoc
Expertise: Bioinformatics, Integrative Data Analysis, Gene Clusters, Data Management, Transcriptional Regulation, Gene Regulatory Network Inference, Secondary Metabolites
Tools: LaTeX, R, CASSIS, MEME, Python, SMIPS, FIMO, Perl, antiSMASH
Projects: FungiNet A - Aspergillus projects, FungiNet B - Bioinformatics projects, FungiNet C - Candida projects, FungiNet total, INF
Institutions: Leibniz-Institute for Natural Product Research and Infection Biology Hans Knöll Institute (HKI)
Disciplines: Not specified
Roles: Not specified
Expertise: Bioinformatics, Gene Regulatory Network Inference, Systems Biology, Integrative Data Analysis, Host-Pathogen Interaction
Tools: Systems biological modelling, Proteomics, Genetic analysis, Genomics, Transcriptomics
I study the analysis of high-throughput transcriptom and genome data.
For transcritom data (RNA-Seq, microarrays), I perform preprocessing and statistics to identify differentially expressed genes, as well as their functional analysis. My main focus is the analysis of transcriptom data
from human fungal pathogens in infection related conditions (f.e. nutrient limitation) as well as during the interaction with the host (dual RNA-seq).
Experimental data is used to set up mathematical models for
...
Projects: FungiNet B - Bioinformatics projects, FungiNet total, B1, B2
Institutions: Julius Maximilians University Würzburg, Biocenter, Department of Bioinformatics
Disciplines: Not specified
Roles: Not specified
Expertise: Bioinformatics, Gene Regulatory Network Inference, Metabolic networks, Biochemistry, Integrative Data Analysis, Systems Biology, Host-Pathogen Interaction, Mathematical Modelling
Tools: Systems biological modelling, bioinformatics protein and RNA structure analysis
Name
Prof. Dr. Thomas Dandekar
Position Professor and Chairman
Affiliation
Dept. of bioinformatics,
Biocenter
University of Würzburg
Am Hubland
97074 Würzburg
Phone 0931-318-4551
dandekar@biozentrum.uni-wuerzburg.de
Born 23.07.1960
Career 1979-1986 Studies in medicine at the Ludwig Maximilians University of Munich
1982-1986 MD, Max Planck Inst. of Psychiatry, Dept. Neuropharmacology, Martinsried
1987-1988 Post-Doc, Institute Pasteur, Paris
1988- now Scientist at the European Molecular Biology
...
Projects: INF
Institutions: BioControl Jena GmbH
Disciplines: Bioinformatician
Roles: Not specified
Expertise: Statistics, Data Management, Integrative Data Analysis, Bioinformatics, Systems Biology
Tools: Not specified
Abstract (Expand)
Authors: Jan Ewald, Christoph Kaleta, Bartl M.
Date Published: 30th Jul 2017
Journal: Biochem Soc Trans
PubMed ID: 28754658
Citation: Biochem Soc Trans. 2017 Jul 28. pii: BST20170137. doi: 10.1042/BST20170137.
Abstract (Expand)
Authors: Jan Ewald, Thomas Dandekar, Christoph Kaleta, Bartl M.
Date Published: 18th Feb 2017
Journal: PLoS Comput Biol
PubMed ID: 28212377
Citation: PLoS Comput Biol. 2017 Feb 17;13(2):e1005371. doi: 10.1371/journal.pcbi.1005371. eCollection 2017 Feb.