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| Source: Specimen | Source: Material Type | Source: Organism | Source: Strain or Line | Source: Organism Part | Source: OrganismStatus | Source: Number of fungal organisms | Source: Unit for number of fungi | Source: Sex (e.g. for mice) | Source: Age | Source: Age Time Unit | Source: Sampling Time Point | Source: Sampling Time Point Unit | Source: Temperature | Source: Temperature Unit | Source: pH | Source: Atmosphere | Source: Compound | Source: Media | Source: Nutrients | Source: Storage Protocol | Source: Storage Date | Source: Storage Location | RNA Extraction: Extraction Protocol | RNA Extraction: Extract Name | RNA Extraction: 260/280 | RNA Extraction: 230/280 | RNA Extraction: RIN/RNA integrity number | RNA Extraction: Concentration | RNA Extraction: Concentration Unit | RNA Extraction: Volume | RNA Extraction: Volume Unit | RNA Extraction: Extraction Kit | RNA Extraction: Material Type | RNA Extraction: Extraction Date | RNA Extraction: Storage Protocol | RNA Extraction: Storage Date | RNA Extraction: Storage Location | Sequencing: Sequencing Protocol | Sequencing: Assay Name | Sequencing: Sequencing Performer | Sequencing: Technology Type | Sequencing: Read Length | Sequencing: Sequencing Instrument | Sequencing: Library Source | Sequencing: Library Strategy | Sequencing: Library Selection | Sequencing: Library Layout | Sequencing: Sequencing Date | Sequencing: Storage Protocol | Sequencing: Storage Date | Sequencing: Storage Location | Sequencing: Data File | |||||||||||||||||||||||||||||||||||||||||||||||
| Source Name | Material Type | Characteristics[Organism] | Characteristics[StrainOrLine] | Characteristics[OrganismPart] | Characteristics[OrganismStatus] | Characteristics[Number of fungal organisms] | Unit[CellUnit] | Characteristics[Sex] | Characteristics[Age] | Unit[TimeUnit] | Characteristics[SamplingTimePoint] | Unit[TimeUnit] | Characteristics[Temperature] | Unit[TemperatureUnit] | Characteristics[pH] | Characteristics[Atmosphere] | Characteristics[Compound] | Characteristics[Media] | Characteristics[Nutrients] | Protocol REF | Date | Comment | Protocol REF | Extract Name | Parameter[260/280] | Parameter[230/280] | Parameter[RIN/RNA integrity number] | Parameter[Concentration] | Unit[ConcentrationUnit] | Parameter[Volume] | Unit[VolumeUnit] | Parameter[Kit] | Material Type | Date | Protocol REF | Date | Comment | Protocol REF | Assay Name | Parameter[Performer] | Parameter[Technology Type] | Parameter[Read Length] | Protocol Hardware | Parameter[Library_Source] | Parameter[Library_Strategy] | Parameter[Library_Selection] | Parameter[Library_Layout] | Date | Protocol REF | Date | Comment | Array Data File | |||||||||||||||||||||||||||||||||||||||||||||||
| Af_0min+O2-A1 | whole_organism | Aspergillus fumigatus | other | conidia | not applicable | 0 | minute(s) | 37 | degrees_C | air | none | O2 saturation at 100% (≈260 µmol l-1) | none | NO STORAGE | RNA EXTRACTION | Af_0min+O2-A1 | μg/ml | μl | RNA extraction kit | total_RNA | NO STORAGE | SEQUENCING | Af_0min+O2-A1 | GATC Biotech | Sequencing by synthesis (Illumina) | Illumina HiSeq 2000 | transcriptomic | single end; poly-A filter | random | single | STORAGE | 2015-07-24T0:0:0+0000 | stored at HKI Backupserver | /sbiarchiv/jlinde/A_fumigatus/Falk_Hillmann_2013_04/NG-6598_A1_lib20923_1519_6_1.fastq.gz | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Af_15min-O2-A2 | whole_organism | Aspergillus fumigatus | other | conidia | not applicable | 15 | minute(s) | 37 | degrees_C | hypoxia | none | none | NO STORAGE | RNA EXTRACTION | Af_15min-O2-A2 | μg/ml | μl | RNA extraction kit | total_RNA | NO STORAGE | SEQUENCING | Af_15min-O2-A2 | GATC Biotech | Sequencing by synthesis (Illumina) | Illumina HiSeq 2000 | transcriptomic | single end; poly-A filter | random | single | STORAGE | 2015-07-24T0:0:0+0000 | stored at HKI Backupserver | /sbiarchiv/jlinde/A_fumigatus/Falk_Hillmann_2013_04/NG-6598_A2_lib20924_1519_6_1.fastq.gz | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Af_30min-O2-A3 | whole_organism | Aspergillus fumigatus | other | conidia | not applicable | 30 | minute(s) | 37 | degrees_C | hypoxia | none | none | NO STORAGE | RNA EXTRACTION | Af_30min-O2-A3 | μg/ml | μl | RNA extraction kit | total_RNA | NO STORAGE | SEQUENCING | Af_30min-O2-A3 | GATC Biotech | Sequencing by synthesis (Illumina) | Illumina HiSeq 2000 | transcriptomic | single end; poly-A filter | random | single | STORAGE | 2015-07-24T0:0:0+0000 | stored at HKI Backupserver | /sbiarchiv/jlinde/A_fumigatus/Falk_Hillmann_2013_04/NG-6598_A3_lib20925_1519_6_1.fastq.gz | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Af_15min+O2-A4(75min) | whole_organism | Aspergillus fumigatus | other | conidia | not applicable | 75 | minute(s) | 37 | degrees_C | air | none | O2 saturation at 100% (≈260 µmol l-1) | none | NO STORAGE | RNA EXTRACTION | Af_15min+O2-A4 | μg/ml | μl | RNA extraction kit | total_RNA | NO STORAGE | SEQUENCING | Af_15min+O2-A4 | GATC Biotech | Sequencing by synthesis (Illumina) | Illumina HiSeq 2000 | transcriptomic | single end; poly-A filter | random | single | STORAGE | 2015-07-24T0:0:0+0000 | stored at HKI Backupserver | /sbiarchiv/jlinde/A_fumigatus/Falk_Hillmann_2013_04/NG-6598_A4_lib20926_1519_6_1.fastq.gz | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Af_0min+O2-B1 | whole_organism | Aspergillus fumigatus | other | conidia | not applicable | 0 | minute(s) | 37 | degrees_C | air | none | O2 saturation at 100% (≈260 µmol l-1) | none | NO STORAGE | RNA EXTRACTION | Af_0min+O2-B1 | μg/ml | μl | RNA extraction kit | total_RNA | NO STORAGE | SEQUENCING | Af_0min+O2-B1 | GATC Biotech | Sequencing by synthesis (Illumina) | Illumina HiSeq 2000 | transcriptomic | single end; poly-A filter | random | single | STORAGE | 2015-07-24T0:0:0+0000 | stored at HKI Backupserver | /sbiarchiv/jlinde/A_fumigatus/Falk_Hillmann_2013_04/NG-6598_B1_lib20927_1519_6_1.fastq.gz | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Af_15min-O2-B2 | whole_organism | Aspergillus fumigatus | other | conidia | not applicable | 15 | minute(s) | 37 | degrees_C | hypoxia | none | none | NO STORAGE | RNA EXTRACTION | Af_15min-O2-B2 | μg/ml | μl | RNA extraction kit | total_RNA | NO STORAGE | SEQUENCING | Af_15min-O2-B2 | GATC Biotech | Sequencing by synthesis (Illumina) | Illumina HiSeq 2000 | transcriptomic | single end; poly-A filter | random | single | STORAGE | 2015-07-24T0:0:0+0000 | stored at HKI Backupserver | /sbiarchiv/jlinde/A_fumigatus/Falk_Hillmann_2013_04/NG-6598_B2_lib20928_1519_6_1.fastq.gz | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Af_30min-O2-B3 | whole_organism | Aspergillus fumigatus | other | conidia | not applicable | 30 | minute(s) | 37 | degrees_C | hypoxia | none | none | NO STORAGE | RNA EXTRACTION | Af_30min-O2-B3 | μg/ml | μl | RNA extraction kit | total_RNA | NO STORAGE | SEQUENCING | Af_30min-O2-B3 | GATC Biotech | Sequencing by synthesis (Illumina) | Illumina HiSeq 2000 | transcriptomic | single end; poly-A filter | random | single | STORAGE | 2015-07-24T0:0:0+0000 | stored at HKI Backupserver | /sbiarchiv/jlinde/A_fumigatus/Falk_Hillmann_2013_04/NG-6598_B3_lib20929_1519_6_1.fastq.gz | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Af_15min+O2-B4(75min) | whole_organism | Aspergillus fumigatus | other | conidia | not applicable | 75 | minute(s) | 37 | degrees_C | air | none | O2 saturation at 100% (≈260 µmol l-1) | none | NO STORAGE | RNA EXTRACTION | Af_15min+O2-B4 | μg/ml | μl | RNA extraction kit | total_RNA | NO STORAGE | SEQUENCING | Af_15min+O2-B4 | GATC Biotech | Sequencing by synthesis (Illumina) | Illumina HiSeq 2000 | transcriptomic | single end; poly-A filter | random | single | STORAGE | 2015-07-24T0:0:0+0000 | stored at HKI Backupserver | /sbiarchiv/jlinde/A_fumigatus/Falk_Hillmann_2013_04/NG-6598_B4_lib22207_1546_7_1.fastq.gz | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Af_0min+O2-C1 | whole_organism | Aspergillus fumigatus | other | conidia | not applicable | 0 | minute(s) | 37 | degrees_C | air | none | O2 saturation at 100% (≈260 µmol l-1) | none | NO STORAGE | RNA EXTRACTION | Af_0min+O2-C1 | μg/ml | μl | RNA extraction kit | total_RNA | NO STORAGE | SEQUENCING | Af_0min+O2-C1 | GATC Biotech | Sequencing by synthesis (Illumina) | Illumina HiSeq 2000 | transcriptomic | single end; poly-A filter | random | single | STORAGE | 2015-07-24T0:0:0+0000 | stored at HKI Backupserver | /sbiarchiv/jlinde/A_fumigatus/Falk_Hillmann_2013_04/NG-6598_C1_lib20931_1519_6_1.fastq.gz | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Af_15min-O2-C2 | whole_organism | Aspergillus fumigatus | other | conidia | not applicable | 15 | minute(s) | 37 | degrees_C | hypoxia | none | none | NO STORAGE | RNA EXTRACTION | Af_15min-O2-C2 | μg/ml | μl | RNA extraction kit | total_RNA | NO STORAGE | SEQUENCING | Af_15min-O2-C2 | GATC Biotech | Sequencing by synthesis (Illumina) | Illumina HiSeq 2000 | transcriptomic | single end; poly-A filter | random | single | STORAGE | 2015-07-24T0:0:0+0000 | stored at HKI Backupserver | /sbiarchiv/jlinde/A_fumigatus/Falk_Hillmann_2013_04/NG-6598_C2_lib20932_1519_6_1.fastq.gz | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Af_30min-O2-C3 | whole_organism | Aspergillus fumigatus | other | conidia | not applicable | 30 | minute(s) | 37 | degrees_C | hypoxia | none | none | NO STORAGE | RNA EXTRACTION | Af_30min-O2-C3 | μg/ml | μl | RNA extraction kit | total_RNA | NO STORAGE | SEQUENCING | Af_30min-O2-C3 | GATC Biotech | Sequencing by synthesis (Illumina) | Illumina HiSeq 2000 | transcriptomic | single end; poly-A filter | random | single | STORAGE | 2015-07-24T0:0:0+0000 | stored at HKI Backupserver | /sbiarchiv/jlinde/A_fumigatus/Falk_Hillmann_2013_04/NG-6598_C3_lib20933_1519_6_1.fastq.gz | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Af_15min+O2-C4(75min) | whole_organism | Aspergillus fumigatus | other | conidia | not applicable | 75 | minute(s) | 37 | degrees_C | air | none | O2 saturation at 100% (≈260 µmol l-1) | none | NO STORAGE | RNA EXTRACTION | Af_15min+O2-C4 | μg/ml | μl | RNA extraction kit | total_RNA | NO STORAGE | SEQUENCING | Af_15min+O2-C4 | GATC Biotech | Sequencing by synthesis (Illumina) | Illumina HiSeq 2000 | transcriptomic | single end; poly-A filter | random | single | STORAGE | 2015-07-24T0:0:0+0000 | stored at HKI Backupserver | /sbiarchiv/jlinde/A_fumigatus/Falk_Hillmann_2013_04/NG-6598_C4_lib20934_1533_5_1.fastq.gz | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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